LOC118936466 (LOC106609620)


Basic Information

Item Value
gene id LOC118936466
gene name LOC106609620
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 57141510 ~ 57144118 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036955133.1
TCATTTTCAGTCTGGAcgcggaggggtgaacatctaATCTGACTGCTGCGAGAGGACTGGGCCGCatgtgagtgctttgggacggtgtggggcccacggcagcacccgctgctcgttgagaagagggcagaacgacagatgtttaccttgtcagcccgggGATTTGATGTCGTTTACCGGCCCAACGCTGTAACCCACAAGGCTACTTGCCTCTCCTGAAACCACCTACTTTGGCCGAGAACCAATCAACAGAATCAGGGCAGAACCTTCAGTGGACCAGCATGGGTTGAAGGGGGGTTCAATATGTCTGGTTGTTCCAGAACCTCCTGAGATGATCAAAGGACTTCAATGGAGGAAGGACAGTGATGTAATATTTGGAGACAAAGAGATCTCTCCTAAATACAAGGATAAGGTGGACTATAACAATGATAACCATTCTCTGTGTATTAAGAATCTAATGGAAACTGACAGTGGAATTTACATGGTAAACTACAGGAAACATTGGAAACAATCAACTACTACATATAGACTGTTAGTGGAGGATCATGTTCCCAAACCAGTCATGGATGTCACATCTCTCAACACAAGTGTGGGACTCTGTGATGTCACAGTGAACTGTTCAGTTAAAGATGGCTggatgttgtctgtctgtgacaGCGGTCAGTGTACACTGTCACAACAGTCTCCGTCACTAACCGGTGGTAACATGACCATCTCCGTATTGACTGGAAGGATCCAATGCACCAGCAGCAACCACGTCAGCACACAGACCATCTCTCAACCCATGGAGGACTGTAGTGGTAATGTGAAAGCCTCAGTGTTACCAGTTGGCACCATTGTGGGCTGTGTTACTGGTATATTACTCCTAGTTGCTGTGTTACTTGGTGTTGGATACATCAAACATACCAGAAGACAGAAAATCCCTAAAGAACAAAGTCCACTAGAAGAGGTCATTGTTCCAAGAGTTTACAACTCAGTGAAGACCTCACCAGGGAGAGAAGAACCACAGCATCTCCCTACCAGAACCACAGCCCTGTCCTGACCAGAACCACAGCACTCTCCTGGTCAGAACCACAGCACTCTCCTGGCCAGAACCACAGCACTCTCCTGGTCAGAACCACAGCACTCTCCTGGTCAGAACCACAGCACTCTCCTGACCAGAACCACAGCCCTCTCCTGTCCAGAACCACAGCCCTCTCCTGTCCAGAACCACAGCCCTCTCCTGACCAGAACCACAGCCCTCTCCTGTCCAGAACCACAGCCCTGTCCTGACCAGAACCACAGCCCTCTCCTGTCCAGAAccacatatatatacatttttatattccaTTTCATGGAAGTTTCTTTATCCATGAAATGAAGTGGGTGGAGAACAAACCCCTCTTCACATTGTTACAGATAGAATTGAACCATTATTTTGAAATGATCAGTAAAAGTGGAAATACAAAAAAGCAATATGTATCATAAAATGTTTTGACAAACTGAAAATGTATCTTGA
>XM_036955134.1
TTCAGTCTGGAcgcggaggggtgaacatctaATCTGACTGCTGCGAGAGGACTGGGCCGCatgtgagtgctttgggacggtgtggggcccacggcagcacccgctgctcgttgagaagacgacaactgccttgttcaggggcagaacgacagatgtttaccttgtcagcccgggGATTTGATGTCGTTTACCGGCCCAACGCTGTAACCCACAAGGCTACTTGCCTCTCCTGAAACCACCTACTTTGGCCGAGAACCAATCAACAGAATCAGGGCAGAACCTTCAGTGGACCAGCATGGGTTGAAGGGGGGTTCAATATGTCTGGTTGTTCCAGAACCTCCTGAGATGATCAAAGGACTTCAATGGAGGAAGGACAGTGATGTAATATTTGGAGACAAAGAGATCTCTCCTAAATACAAGGATAAGGTGGACTATAACAATGATAACCATTCTCTGTGTATTAAGAATCTAATGGAAACTGACAGTGGAATTTACATGGTAAACTACAGGAAACATTGGAAACAATCAACTACTACATATAGACTGTTAGTGGAGGATCATGTTCCCAAACCAGTCATGGATGTCACATCTCTCAACACAAGTGTGGGACTCTGTGATGTCACAGTGAACTGTTCAGTTAAAGATGGCTggatgttgtctgtctgtgacaGCGGTCAGTGTACACTGTCACAACAGTCTCCGTCACTAACCGGTGGTAACATGACCATCTCCGTATTGACTGGAAGGATCCAATGCACCAGCAGCAACCACGTCAGCACACAGACCATCTCTCAACCCATGGAGGACTGTAGTGGTAATGTGAAAGCCTCAGTGTTACCAGTTGGCACCATTGTGGGCTGTGTTACTGGTATATTACTCCTAGTTGCTGTGTTACTTGGTGTTGGATACATCAAACATACCAGAAGACAGAAAATCCCTAAAGAACAAAGTCCACTAGAAGAGGTCATTGTTCCAAGAGTTTACAACTCAGTGAAGACCTCACCAGGGAGAGAAGAACCACAGCATCTCCCTACCAGAACCACAGCCCTGTCCTGACCAGAACCACAGCACTCTCCTGGTCAGAACCACAGCACTCTCCTGGCCAGAACCACAGCACTCTCCTGGTCAGAACCACAGCACTCTCCTGGTCAGAACCACAGCACTCTCCTGACCAGAACCACAGCCCTCTCCTGTCCAGAACCACAGCCCTCTCCTGTCCAGAACCACAGCCCTCTCCTGACCAGAACCACAGCCCTCTCCTGTCCAGAACCACAGCCCTGTCCTGACCAGAACCACAGCCCTCTCCTGTCCAGAAccacatatatatacatttttatattccaTTTCATGGAAGTTTCTTTATCCATGAAATGAAGTGGGTGGAGAACAAACCCCTCTTCACATTGTTACAGATAGAATTGAACCATTATTTTGAAATGATCAGTAAAAGTGGAAATACAAAAAAGCAATATGTATCATAAAATGTTTTGACAAACTGAAAATGTATCTTGA
>XM_036955135.1
CGAGAGGACTGGGCCGCatgggcagaacgacagatgtttaccttgtcagcccgggGATTTGATGTCGTTTACCGGCCCAACGCTGTAACCCACAAGGCTACTTGCCTCTCCTGAAACCACCTACTTTGGCCGAGAACCAATCAACAGAATCAGGGCAGAACCTTCAGTGGACCAGCATGGGTTGAAGGGGGGTTCAATATGTCTGGTTGTTCCAGAACCTCCTGAGATGATCAAAGGACTTCAATGGAGGAAGGACAGTGATGTAATATTTGGAGACAAAGAGATCTCTCCTAAATACAAGGATAAGGTGGACTATAACAATGATAACCATTCTCTGTGTATTAAGAATCTAATGGAAACTGACAGTGGAATTTACATGGTAAACTACAGGAAACATTGGAAACAATCAACTACTACATATAGACTGTTAGTGGAGGATCATGTTCCCAAACCAGTCATGGATGTCACATCTCTCAACACAAGTGTGGGACTCTGTGATGTCACAGTGAACTGTTCAGTTAAAGATGGCTggatgttgtctgtctgtgacaGCGGTCAGTGTACACTGTCACAACAGTCTCCGTCACTAACCGGTGGTAACATGACCATCTCCGTATTGACTGGAAGGATCCAATGCACCAGCAGCAACCACGTCAGCACACAGACCATCTCTCAACCCATGGAGGACTGTAGTGGTAATGTGAAAGCCTCAGTGTTACCAGTTGGCACCATTGTGGGCTGTGTTACTGGTATATTACTCCTAGTTGCTGTGTTACTTGGTGTTGGATACATCAAACATACCAGAAGACAGAAAATCCCTAAAGAACAAAGTCCACTAGAAGAGGTCATTGTTCCAAGAGTTTACAACTCAGTGAAGACCTCACCAGGGAGAGAAGAACCACAGCATCTCCCTACCAGAACCACAGCCCTGTCCTGACCAGAACCACAGCACTCTCCTGGTCAGAACCACAGCACTCTCCTGGCCAGAACCACAGCACTCTCCTGGTCAGAACCACAGCACTCTCCTGGTCAGAACCACAGCACTCTCCTGACCAGAACCACAGCCCTCTCCTGTCCAGAACCACAGCCCTCTCCTGTCCAGAACCACAGCCCTCTCCTGACCAGAACCACAGCCCTCTCCTGTCCAGAACCACAGCCCTGTCCTGACCAGAACCACAGCCCTCTCCTGTCCAGAAccacatatatatacatttttatattccaTTTCATGGAAGTTTCTTTATCCATGAAATGAAGTGGGTGGAGAACAAACCCCTCTTCACATTGTTACAGATAGAATTGAACCATTATTTTGAAATGATCAGTAAAAGTGGAAATACAAAAAAGCAATATGTATCATAAAATGTTTTGACAAACTGAAAATGTATCTTGA

Function

NR:

description
uncharacterized protein LOC110517953

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036955133.1 False 1498 mRNA 0.47 6 57141510 57144118
XM_036955134.1 False 1512 mRNA 0.47 6 57141515 57144118
XM_036955135.1 True 1393 mRNA 0.46 6 57141558 57144118

Neighbor

gene id symbol gene type direction distance location
LOC110498166 LOC106609620 coding upstream 4615 57113265 ~ 57136895 (+)
LOC118941496 LOC106609620 coding upstream 35733 57102972 ~ 57105777 (+)
LOC118941495 LOC106609620 coding upstream 39168 57099441 ~ 57102342 (+)
LOC110517953 LOC106609620 coding upstream 44879 57089069 ~ 57096631 (+)
LOC110511273 LOC106609620 coding upstream 52906 57086293 ~ 57088604 (+)
LOC118941498 LOC106609620 coding downstream 19655 57069851 ~ 57167057 (+)
LOC110498389 LOC106612499 coding downstream 32721 57176839 ~ 57196955 (+)
LOC110498167 LOC106612547 coding downstream 71121 57215239 ~ 57274602 (+)
LOC110498392 LOC106612959 coding downstream 256639 57400757 ~ 57502753 (+)
nipal3 nipal3 coding downstream 410832 57554950 ~ 57563838 (+)
G1641904 NA non-coding upstream 130591 57010330 ~ 57010919 (+)
G1641893 NA non-coding upstream 149377 56991885 ~ 56992133 (+)
G1641883 NA non-coding upstream 155100 56986189 ~ 56986410 (+)
G1641879 NA non-coding upstream 158216 56982843 ~ 56983294 (+)
G1641933 NA non-coding downstream 17161 57161279 ~ 57162259 (+)
G1642100 NA non-coding downstream 128334 57272452 ~ 57272747 (+)
G1642060 NA non-coding downstream 133209 57277327 ~ 57278371 (+)
G1642101 NA non-coding downstream 135142 57279260 ~ 57279537 (+)
G1641713 LOC106560842 other upstream 311201 56825952 ~ 56830309 (+)
G1641407 NA other upstream 630413 56509929 ~ 56511097 (+)
G1641405 NA other upstream 635613 56500157 ~ 56505897 (+)
LOC110498153 LOC106561476 other upstream 1211215 55927603 ~ 55932079 (+)
LOC110498128 LOC106610688 other upstream 2171900 54968308 ~ 54969856 (+)
G1642062 NA other downstream 130935 57275053 ~ 57276777 (+)
G1642565 NA other downstream 512231 57656349 ~ 57682553 (+)
G1642993 LOC106611338 other downstream 1020359 58164477 ~ 58176485 (+)
LOC110498189 klhdc1 other downstream 1149218 58293310 ~ 58298259 (+)
G1644123 NA other downstream 1910405 59054523 ~ 59057223 (+)

Expression


Co-expression Network