LOC118941498 (LOC106609620)


Basic Information

Item Value
gene id LOC118941498
gene name LOC106609620
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 57069851 ~ 57167057 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005037803.1
ATACTTACTGTTGATTGGTTCTCGGCCAAAGTAGGTGGTTTCCGGAGAGGCAAGTAGCCTTGTGGGTTACAGCGTTGGGCCGGTAAACGACATCAAATCcccgggctgacaagCCCTCACCGGCACCCTGGGTGATCCAGGAGAAGACAAGGGAGCTTCAGTGGACCCTCCTGATGGGCGAGCAGGacatacaggaggaggaggagtggtatGGGGACGAGATACCTTGTAACTGGAGATTCTTTCAAAATGATTGCCTACAGTTCCCGTGTCGGGCTCTGCAGGGTTGGGTGACCAGGGCCAGGGCAACATCAGAcactacactatgcacaaccaaaggctcttctaagagggtgctgttccctggcaacaccaggcactacactatgcacaaccaaaggctcttctaagagggtgctgttccctggcaacaccagacactacactatgcacaaccaaatGCTCTTCTAAGagggtgctgttccctggcaacaccatacactacactatgcacaaccaaaggctcttctaagagggtgctgttccctggcaacaccatacactacactatgcacaaccaaaggCTATTCTTAGagggtgctgttccctggcaacaccatagactacactatgcacaaccaaagattcttctatttaaaaaaaaaaaaaattggactTAAAGCTCAAAGTTTGTGGACCAGAAATGGATAGAAGAAGAATATTAATATACCTCTGTTGCACTTGACTATGTTCTTGCCTATTAGTtgaactgtactgtattgtattcttcCCCTGCAATTTTCtgaataaaaatgtcaatttcaa
>TU1878233
AGAGGTACACAGTGAAGGTGGAGGCTAAATGGTACTTACAGTCCTCCATGGGTTGAGAGATGGTCTGTGTGCTGACGTGATTGCTGCTGGTGCATTGGATCCTTCCAGTCAATACGGAGATGGTCATGTTACCACCGGTTAGTGACGGAGACTGTTGTGACAGTGTACACTGACCGCtgtcacagacagacaacatccAGACATCTTTAACTGAACAGTTCACTGTGACATCACAGCAACCCACACTTGTGTTGAAGAGAGATGTGACATCCATGACTGGTTTGGGAACATGATCTATAAGAGACAGTTTTTAGAACCAAAGAAGAGACAGATAATTATTAGTCCTACATTCATTATTGAACCTCATCAGACACATTAAATGTACAGCAAATGACCAGAACTGAAGCCTTAGAAAACTCACCCTCCACTAACAGTCTATATGTAGTAGTTGATTGTTTCCAATGTTTCCTGTAGTTTACCATGTAAATTCCACTGTCAGTTTCCATTAGATTCTTAATACACAGAGAATGGTTATCATTGTTATAGTCCACCTTCTCCTTGTATTTAGGAGAGATCTCTTTGTCTCCAAATATTACATCACTGTCCTTCCTCCATTGAAGTCCTTTGATCATCTCAGGAGGTTCTGGAACAACCAGACATATTGAATCCCCCTTCAACCCATACTGGTCCACTGAAGGTTCTGCCCTGATTCCTAATGAGAGAGGACCAAGATCACATTTAGCATTTCACTGACTGTCATTAATGTACATATTAAATCAGTAAATCATTTGCTGCCTATAAAAAAACTTTTCCAATTACCCATTTTATGTGCACAAAGTTAACATTCTACAGTTTAATTCCAATGTCAAAAGAGATGTctccacacaatataatgaatAGGTTACCTATGGTGATGCATAGCCATAAAATGAGAAGAAACCCCAGAATATTCATATTCCTTTTGAAAATGAGAGATAAAGTTTCACAGCGCAGTCCCTGAATAATGCTGCTTAATATATATCACTGCGACTTCAAACCACCTCTTCAGAATCAGGCCTGAACTATACTTACTGTTGATTGGTTCTCGGCCAAAGTAGGTGGTTTCCGGAGAGGCAAGTAGCCTTGTGGGTTACAGCGTTGGGCCGGTAAACGACATCAAATCcccgggctgacaagATACCTTGTAACTGGAGATTCTTTCAAAATGATTGCCTACAGTTCCCGTGTCGGGCTCTGCAGGGTTGGGTGACCAGGGCCAGGGCAACATCAGAcactacactatgcacaaccaaaggctcttctaagagggtgctgttccctggcaacaccaggcactacactatgcacaaccaaaggctcttctaagagggtgctgttccctggcaacaccagacactacactatgcacaaccaaatGCTCTTCTAAGagggtgctgttccctggcaacaccatacactacactatgcacaaccaaaggctcttctaagagggtgctgttccctggcaacaccatacactacactatgcacaaccaaaggCTATTCTTAGagggtgctgttccctggcaacaccatagactacactatgcacaacc
>TU1878234
AGAGGTACACAGTGAAGGTGGAGGCTAAATGGTACTTACAGTCCTCCATGGGTTGAGAGATGGTCTGTGTGCTGACGTGATTGCTGCTGGTGCATTGGATCCTTCCAGTCAATACGGAGATGGTCATGTTACCACCGGTTAGTGACGGAGACTGTTGTGACAGTGTACACTGACCGCtgtcacagacagacaacatccAGACATCTTTAACTGAACAGTTCACTGTGACATCACAGCAACCCACACTTGTGTTGAAGAGAGATGTGACATCCATGACTGGTTTGGGAACATGATCTATAAGAGACAGTTTTTAGAACCAAAGAAGAGACAGATAATTATTAGTCCTACATTCATTATTGAACCTCATCAGACACATTAAATGTACAGCAAATGACCAGAACTGAAGCCTTAGAAAACTCACCCTCCACTAACAGTCTATATGTAGTAGTTGATTGTTTCCAATGTTTCCTGTAGTTTACCATGTAAATTCCACTGTCAGTTTCCATTAGATTCTTAATACACAGAGAATGGTTATCATTGTTATAGTCCACCTTCTCCTTGTATTTAGGAGAGATCTCTTTGTCTCCAAATATTACATCACTGTCCTTCCTCCATTGAAGTCCTTTGATCATCTCAGGAGGTTCTGGAACAACCAGACATATTGAATCCCCCTTCAACCCATACTGGTCCACTGAAGGTTCTGCCCTGATTCCTAATGAGAGAGGACCAAGATCACATTTAGCATTTCACTGACTGTCATTAATGTACATATTAAATCAGTAAATCATTTGCTGCCTATAAAAAAACTTTTCCAATTACCCATTTTATGTGCACAAAGTTAACATTCTACAGTTTAATTCCAATGTCAAAAGAGATGTctccacacaatataatgaatAGGTTACCTATGGTGATGCATAGCCATAAAATGAGAAGAAACCCCAGAATATTCATATTCCTTTTGAAAATGAGAGATAAAGTTTCACAGCGCAGTCCCTGAATAATGCTGCTTAATATATATCACTGCGACTTCAAACCACCTCTTCAGAATCAGGCCTGAACTATACTTACTGTTGATTGGTTCTCGGCCAAAGTAGGTGGTTTCCGGAGAGGCAAGTAGCCTTGTGGGTTACAGCGTTGGGCCGGTAAACGACATCAAATCcccgggctgacaaggtaaacatctgtcgttctgcccctgaacaaggcagttgtcgCTGTATACCTTGTAACTGGAGATTCTTTCAAAATGATTGCCTACAGTTCCCGTGTCGGGCTCTGCAGGGTTGGGTGACCAGGGCCAGGGCAACATCAGAcactacactatgcacaaccaaaggctcttctaagagggtgctgttccctggcaacaccaggcactacactatgcacaaccaaaggctcttctaagagggtgctgttccctggcaacaccagacactacactatgcacaaccaaatGCTCTTCTAAGagggtgctgttccctggcaacaccatacactacactatgcacaaccaaaggctcttctaagagggtgctgttccctggcaacaccatacactacactatgcacaaccaaaggCTATTCTTAGagggtgctgttccctggcaacaccatagactacactatgcacaacc
>TU1878232
GTCCTCCATGGGTTGAGAGATGGTCTTTGTGCTGACGTGGTCGCTGCTGGTACATTGGATCCTTCCAGTCAATACGGAGATGGTCATGTTACCACCGGTTAGTGACGGAGACTGTTGTGACAGTGTACACTGACCGCtgtcacagacagacaacatccAGACATCTTTAACTGAACAGTTCACTGTGACATCACAGCAACCCACACTTGTGTTGAAGAGAGATGTGACATCCATGACTGGTTTGGGAACATGATCTATAAGAGACAGTTTTTAGAACCAAAGAAGAGACAGATAATTATTAGTCCTACATTCATTATTGAACCTCATCAGACACATTAAATGTACAGCAAATGACCAGAACTGAAGCCTTAGAAAACTCACCCTCCACTAACAGTCTATATGTAGTAGTTGATTGTTTCCAATGTTTCCTGTAGTTTACCATGTAAATTCCACTGTCAGTTTCCATTAGATTCTTAATACACAGAGAATGGTTATCATTGTTATAGTCCACCTTCTCCTTGTATTTAGGAGAGATCTCTTTGTCTCCAAATATTACATCACTGTCCTTCCTCCATTGAAGTCCTTTGATCATCTCAGGAGGTTCTGGAACAACCAGACATATTGAATCCCCCTTCAACCCATACTGGTCCACTGAAGGTTCTGCCCTGATTCCTAATGAGAGAGGACCAAGATCACATTTAGCATTTCACTGACTGTCATTAATGTACATATTAAATCAGTAAATCATTTGCTGCCTATAAAAAAACTTTTCCAATTACCCATTTTATGTGCACAAAGTTAACATTCTACAGTTTAATTCCAATGTCAAAAGAGATGTctccacacaatataatgaatAGGTTACCTATGGTGATGCATAGCCATAAAATGAGAAGAAACCCCAGAATATTCATATTCCTTTTGAAAATGAGAGATAAAGTTTCACAGCGCAGTCCCTGAATAATGCTGCTTAATATATATCACTGCGACTTCAAACCACCTCTTCAGAATCAGGCCTGAACTATACTTACTGTTGATTGGTTCTCGGCCAAAGTAGGTGGTTTCCGGAGAGGCAAGTAGCCTTGTGGGTTACAGCGTTGGGCCGGTAAACGACATCAAATCcccgggctgacaagCCCTCACCGGCACCCTGGGTGATCCAGGAGAAGACAAGGGAGCTTCAGTGGACCCTCCTGATGGGCGAGCAGGacatacaggaggaggaggagtggtatGGGGACGAGATACCTTGTAACTGGAGATTCTTTCAAAATGATTGCCTACAGTTCCCGTGTCGGGCTCTGCAGGGTTGGGTGACCAGGGCCAGGGCAACATCAGAcactacactatgcacaaccaaaggctcttctaagagggtgctgttccctggcaacaccaggcactacactatgcacaaccaaaggctcttctaagagggtgctgttccctggcaacaccagacactacactatgcacaaccaaatGCTCTTCTAAGagggtgctgttccctggcaacaccatacactacactatgcacaaccaaaggctcttctaagagggtgctgttccctggcaacaccatacactacactatgcacaaccaaaggCTATTCTTAGagggtgctgttccctggcaacaccatagactacactatgcacaacc

Function

NR:

description
uncharacterized protein LOC109894681 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005037803.1 False 825 mRNA 0.47 3 57163773 57167057
TU1878233 False 1595 lncRNA 0.43 3 57069851 57166872
TU1878234 False 1640 lncRNA 0.43 3 57069851 57166872
TU1878232 True 1663 lncRNA 0.44 3 57162750 57166872

Neighbor

gene id symbol gene type direction distance location
LOC118936466 LOC106609620 coding upstream 19655 57141510 ~ 57144118 (+)
LOC110498166 LOC106609620 coding upstream 26878 57113265 ~ 57136895 (+)
LOC118941496 LOC106609620 coding upstream 57996 57102972 ~ 57105777 (+)
LOC118941495 LOC106609620 coding upstream 61431 57099441 ~ 57102342 (+)
LOC110517953 LOC106609620 coding upstream 67142 57089069 ~ 57096631 (+)
LOC110498389 LOC106612499 coding downstream 9782 57176839 ~ 57196955 (+)
LOC110498167 LOC106612547 coding downstream 48182 57215239 ~ 57274602 (+)
LOC110498392 LOC106612959 coding downstream 233700 57400757 ~ 57502753 (+)
nipal3 nipal3 coding downstream 387893 57554950 ~ 57563838 (+)
LOC110498171 rcan3 coding downstream 397220 57564277 ~ 57648271 (+)
G1641933 NA non-coding upstream 1514 57161279 ~ 57162259 (+)
G1641904 NA non-coding upstream 152854 57010330 ~ 57010919 (+)
G1641893 NA non-coding upstream 171640 56991885 ~ 56992133 (+)
G1641883 NA non-coding upstream 177363 56986189 ~ 56986410 (+)
G1642100 NA non-coding downstream 105395 57272452 ~ 57272747 (+)
G1642060 NA non-coding downstream 110270 57277327 ~ 57278371 (+)
G1642101 NA non-coding downstream 112203 57279260 ~ 57279537 (+)
G1642080 NA non-coding downstream 116067 57283124 ~ 57315063 (+)
G1641935 NA other upstream 19848 57135826 ~ 57143925 (+)
G1641713 LOC106560842 other upstream 333464 56825952 ~ 56830309 (+)
G1641407 NA other upstream 652676 56509929 ~ 56511097 (+)
G1641405 NA other upstream 657876 56500157 ~ 56505897 (+)
LOC110498153 LOC106561476 other upstream 1233478 55927603 ~ 55932079 (+)
G1642062 NA other downstream 107996 57275053 ~ 57276777 (+)
G1642565 NA other downstream 489292 57656349 ~ 57682553 (+)
G1642993 LOC106611338 other downstream 997420 58164477 ~ 58176485 (+)
LOC110498189 klhdc1 other downstream 1126279 58293310 ~ 58298259 (+)
G1644123 NA other downstream 1887466 59054523 ~ 59057223 (+)
LOC110498163 LOC106610662 coding upstream 7673 57058534 ~ 57062178 (+)
LOC110498162 LOC106560907 coding upstream 207168 56850905 ~ 56862683 (+)
LOC110498155 LOC106561796 coding upstream 485173 56444523 ~ 56584678 (+)
LOC118941494 NA coding upstream 531222 56534070 ~ 56538629 (+)
LOC118941493 LOC106561950 coding upstream 637142 56114169 ~ 56432709 (+)
G1641879 NA non-coding upstream 86557 56982843 ~ 56983294 (+)
G1641878 NA non-coding upstream 87440 56982208 ~ 56982411 (+)
LOC110498128 LOC106610688 other upstream 2100241 54968308 ~ 54969856 (+)

Expression


Co-expression Network