LOC110498389 (LOC106612499)


Basic Information

Item Value
gene id LOC110498389
gene name LOC106612499
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 57176839 ~ 57196955 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036955140.1
AGTTCTTTCGAGCTCCAAGTCCCTTTTATATAAAATTAAGCTTTTTAGCTGGACAGTGAACCCGATAGTAGCAATATCTCCCCTCCTGAAAATCTGAAGAATCCTTCTAAACTTTGTATTTTCTGGATGAATCAGCATCTCAAGACGTAAACATAAAAGTTTGCTCATACTATACTTGCAAATATCGGGActacttgtttatttatttactatcaAAATAATTAGGCAAAGTTTACGTTTCCTCTACTGGACAAAGGATAATATCGGTTGCAAAGATACAATATTCGTTTCATTGAAAATATTCAAGCAAAGGATACCTCTGGTGCATATTTCACTTGTGAATTTTGAACATTATTAAGTAAATAACCTTTTTATGAACTTTTTGGGACTTTTATCAAGCTAGCTACAAATTGAGAAATAACGTTTCCAGTTCGTATCGGAAAGACCTCAACTCCTCTCATTCACTGTCCTGAATACAGATTACTGGAATCGTCGTGCTTTGTTTGCTAAACATATTTATTTTAAACAGtcgttatttttttatttactaaAATGATGCGGATGCCCAAAGGCGTTTCTCCTGCGTCTAGTCGAGGTGCTATAGGGGGACTGTCGTGTTCGCAGAATAAAGTTTTGTCCGGAGTGAAGACCGAGTTCTTCAGCACCGGGTTACCCAGTCCACCGATGAACTCGGTACCGGCTGGATACTTTACCCAAATATGCAACACGACAGCGGCCGAACAAAGGGCGAACTGCCTGTATGCTACCCCCCATGGACCCGAAGCTAAACCCATCAGATCATCCTCCGGCCGTCTCCCGGCCAAGCGAAAGCTGGACCTGGAGGACCCGCTCTACCTCCCTGACTTCAGGACTCCTAAAGGGAAGGGGAGCACAGCCGCAGCCAGTCATCCAAGTCCCAAAACGCCCAAGTCTCCTGGTGAGCGGACGCGCTACGACACCTCGCTGGGTTTGCTGACCAAGAAGTTTGTTGGCCTGCTGAGCGAGTCACCTGACGGCGTGCTGGACCTCAACTGGGCCACCGAGGTCCTCGAGGTACAGAAGAGACGCATCTATGACATCACCAACGTGCTGGAGGGCGTGCAGCTGATCCGCAAGAAGTCCAAGAACAACATCCAGTGGTTGGTGGGCGGTGTGTTCGAGGGCTCGGCCAGCAGCGGGGAGAAGTCACGTGCCCTGCGACGAGAGCTGGGTGAGCTGGAGAGGGCTGAGAAGGCCTTGGATGATCTGATCACGTCCAGTAGTGCCCAGATCAAGGAGCTGACCGAACACAGAGACAACCAGCGGCTAGGCTACGTTACCTACCAGGACATCAGGTCGATAGCCCGTCTGCAGGACCAGACGGTCATCGCTGTCAAGGCCCCGTCAGAAACCAAGCTGGAGGTCCCAGAGTCCTCAGGGGGCTCCCAACAGATCTACCTGAAGAGTAAGAACGGCCCCATCGAGGTGTACCTCTGTCCCGAGGAGGGCCTGGAGGATGCCAGCCCCGTCAAGAGCACCACCACCCCCAGGAAAGAGTACTCTCATCACCCCCTGGGTCACACTGCCACCACCTCTCCAGCCATGGCACCACCACAGTACACCACCATCAAACAGGAGGTCAAGCAGGAGCCCATGGAGGctGAACTCTCCAGACCAACACCGGTGGTCCCCAACGCCTCCACCAGCAGCAGCACTACCCTCCTTGACGTAGAAGGTCTCCTGGGCCTTCCCCCCAGCATGCTCCAGATGACAGAGGACCAGCTCTCGGGACCCGGGTTTACCCCTGACCCCAACGCCCCCTTCGTCAGCTTCTCACCGGCCCTCGACCACGACGACTACCTATGGGGGCTGGAGGACGGCGAGGGCGTGTCCGACTTCTTCGACACCTACGACCTGGGAGACCTGCTGCGAAGctgagagacgtagagagacttTGAATCCTAAATCAAGCCCTACATTCTAATCACTTGAGTAGATCTGAGAGGGTTGGATAGGTGTAAAGTGGCACTGGCAACCTTGTCGAGGCTGCTTATGGTTTAGGGTCTAGCAGTTGATTTGGGAttcaggaagagagggaaggagaggagggatgggagagggtaGACTATCTGCACGAATAGGGCGAGGAGTTCTTCCCACATCGCGTGACCTGGAGAAACTTATTTATCTAGTTATAGCTTAGTTGTGACCATACAAACAGAATCACTAAATagaatgaatacaaatagtaattgacctgaccaggaaaacctCCAGGCCCCAGTTGTAATAGGATATAAGTGGTCAGGGAAAACTCCAGGCCCTATTCATGAAGGAGTAGTGTCCTCTGTAGGGGTATGGGGTAGGGAGGAAATGTTACACTATGAAGCCATCAACTCTTTGCTTTAGCCATGTCTATTCCACGTTAATGATTTGTCAGAAAAAAATGGGTCTCTTTGTGTCAATTGTACATATATTTTTATACCTTTGTGGTTTGGAATTCAGAGTAGGGCCTGGATtgacactggtgtgtgtgtttgtgtgtgtcccgTTTATAAAACTCTCAACGTTTTTGTGTTGTGTATTTGTATAGCGGACAGTTCGTATCCATCACATTTAAATTGTAATGTGTGCTGTGTAAAAATATAGACACAACACATTTTGTATGCATATCTGATGAGCAAAAAACCCCGCAAAAAACAACTTGGGCATTtatggtaggggggggggggttataataACTCTCAGGAATGTTGTCTTTTCCAGACAAAATGTTTATAGTACCACTCTTTGGCCACTAGGGGGCAACATTGTATTGACAGCTTAAACTCGCCAGCTTTACAGGGTTGAATCATTGTATGTGAAGCTAAACCAGGGTCATGTTCATAAGGAAGAAAATGTATAGAACTCGGAGTAAAAACAGGGCGGCACTACCTGAACGTGTCCAATAAGAACGTAGATTTTCTTtgtccgttgcaaaacgtttcaaAACGTTGTGCCCTGTTGAACACGACCCAGGTACCAAACATGGGAGTCTCTGGTGCTAACATAATATGGTGTTTCAACAAGGTGTAGGAGTATGGGTAATGTAGTTGTTGGGTATACCCAAGGCATTTGTTTATATTGGGGACCTGGTCATTGCCTCCAGCCTTAAGCTTTCTGGACGGTCAGGTAGTGTAATCTTCTGTGTCCCGTGGCAGGATGTGTCCACATCACATCGTAGAGGTTAGTTAGAAGCTGTTCTGGACCCATAGCCAAAGACACAGGGGTCGCGTCCCAAATGTTTTTGACCAGAGGCCCATAGGGAATAACGTGCTATTTGGGATGCTTCCTGGGTCTTTTTAGTGAAGGATATTATCTACCCAATCCCTAATCTATATGTCTCTATTCTATATGTGACTGACTACAGTATCGTGCTTTGCTTGCGAATCGGCAGCTAGGTTTCACATCCTGAAGCTTCTCTATCAAGATACATTtgatagtgtttttttttaatgtaaatgtTAAGAGACTTTGTAGTATTGAATGACTATATATTTCCAAGGAAATGATCCAGTAAGGGTAATAATATACGACAACATCTGGTTTTTAATGTGTGTTTTGATTTAGTCAGTCATTAAGATTAAATAGAGGGCAATCGTCATATCCCCCCCTTCTTCTGAAACTAGATGAAGTCTTTGATTCAATGGTGGTTTGTGTGTTGTCAAACCCACACTAGGGAACAAAGAGGACGGTATatattttctctgttttctttagTTAATGAAGGCTTAGCCCCACGTGTGTGGTAGTTTAAACCTCTGAGAAAAGAGCCAGAATGGTACCCCAAGGTCAAAGTTGGGTCTCTTTAGACtgagttgtgttcattaggcaccaaacggaacaAAACGTACTGAAACGCGGAGGAACTAACACTGATTGTTGTTTTCCATTGCAGAGGGTTTTAAAACGTGTTCCATTGTGTGCTCTGATGAACACCAGTCTAGGAGTTTAAAGGATTTGGACACATTTGAggactattttatttttttgtgaattgtATTTTGGTGCATTTTCTGCCTCTTCCCACAATGTGGGTTTAAGTCAATTGTCCTGTCCTAACAAACTtgaatattttgtgtgtgtgtgtgtgtgtgtgtaaaagagtGAGAAAGGTGTATATTTTTTATTAGACAATTTGAATACAataatttagtttttttgtttAAATTGAATATTATTTTTTTGTAACTGTACAGAATTGATTTTGTATTTATAATCTTTTTCCTGAAGCAATTTGGAAAGTTTAATACTGACCATTGTTAAAGAGCGACTGTCTCTGAATGACACGTGGCACTTAATATTTTGTAACATCGGGCTGTGTTTGAATAAAATAAAGTATTGAAGCCAAA
>TU1878367
CGACAACATCTGGTTTTTAATGTGTGTTTTGATTTAGTCAGTCATTAAGATTAAATAGAGGGCAATCGTCATATCCCCCCCTTCTTCTGAAACTAGATGAAGTCTTTGATTCAATGGTGGTTTGTGTGTTGTCAAACCCACACTAGGGAACAAAGAGGACGGTATatattttctctgttttctttagTTAATGAAGGCTTAGCCCCACGTGTGTGGTAGTTTAAACCTCTGAGAAAAGAGCCAGAATGGTACCCCAAGGTCAAAGTTGGGTCTCTTTAGACtgagttgtgttcattaggcaccaaacggaacaAAACGTACTGAAACGCGGAGGAACTAACACTGATTGTTGTTTTCCATTGCAGAGGGTTTTAAAACGTGTTCCATTGTGTGCTCTGATGAACACCAGTCTAGGAGTTTAAAGGATTTGGACACATTTGAggactattttatttttttgtgaattgtATTTTGGTGCATTTTCTGCCTCTTCCCACAATGTGGGTTTAAGTCAATTGTCCTGTCCTAACAAACTtgaatattttgtgtgtgtgtgtgtgtgtgtgtaaaagagtGAGAAAGGTGTATATTTTTTATTAGACAATTTGAATACAataatttagtttttttgtttAAATTGAATATTATTTTTTTGTAACTGTACAGAATTGATTTTGTATTTATAATCTTTTTCCTGAAGCAATTTGGAAAGTTTAATACTGACCATTGTTAAAGAGCGACTGTCTCTGAATGACACGTGGCACTTAATATTTTGTAACATCGGGCTGTGTTTGAATAAAATAAAGTATTGAAGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036955140.1 False 4370 mRNA 0.45 6 57176839 57196955
TU1878367 True 815 lncRNA 0.36 1 57196137 57196951

Neighbor

gene id symbol gene type direction distance location
LOC118941498 LOC106609620 coding upstream 9782 57069851 ~ 57167057 (+)
LOC118936466 LOC106609620 coding upstream 32721 57141510 ~ 57144118 (+)
LOC110498166 LOC106609620 coding upstream 39944 57113265 ~ 57136895 (+)
LOC118941496 LOC106609620 coding upstream 71062 57102972 ~ 57105777 (+)
LOC118941495 LOC106609620 coding upstream 74497 57099441 ~ 57102342 (+)
LOC110498167 LOC106612547 coding downstream 18284 57215239 ~ 57274602 (+)
LOC110498392 LOC106612959 coding downstream 203802 57400757 ~ 57502753 (+)
nipal3 nipal3 coding downstream 357995 57554950 ~ 57563838 (+)
LOC110498171 rcan3 coding downstream 367322 57564277 ~ 57648271 (+)
slc25a47b LOC106560560 coding downstream 629721 57826676 ~ 57830485 (+)
G1641933 NA non-coding upstream 14580 57161279 ~ 57162259 (+)
G1641904 NA non-coding upstream 165920 57010330 ~ 57010919 (+)
G1641893 NA non-coding upstream 184706 56991885 ~ 56992133 (+)
G1642100 NA non-coding downstream 75497 57272452 ~ 57272747 (+)
G1642060 NA non-coding downstream 80372 57277327 ~ 57278371 (+)
G1642101 NA non-coding downstream 82305 57279260 ~ 57279537 (+)
G1642080 NA non-coding downstream 86169 57283124 ~ 57315063 (+)
G1642195 NA non-coding downstream 240802 57437757 ~ 57440684 (+)
G1641935 NA other upstream 32914 57135826 ~ 57143925 (+)
G1641713 LOC106560842 other upstream 346530 56825952 ~ 56830309 (+)
G1641407 NA other upstream 665742 56509929 ~ 56511097 (+)
G1641405 NA other upstream 670942 56500157 ~ 56505897 (+)
LOC110498153 LOC106561476 other upstream 1246544 55927603 ~ 55932079 (+)
G1642062 NA other downstream 78098 57275053 ~ 57276777 (+)
G1642565 NA other downstream 459394 57656349 ~ 57682553 (+)
G1642993 LOC106611338 other downstream 967522 58164477 ~ 58176485 (+)
LOC110498189 klhdc1 other downstream 1096381 58293310 ~ 58298259 (+)
G1644123 NA other downstream 1857568 59054523 ~ 59057223 (+)

Expression


Co-expression Network