nipal3 (nipal3)


Basic Information

Item Value
gene id nipal3
gene name nipal3
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 57554950 ~ 57563838 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036955157.1
CGTAACAGCTGTGTGTAAAATAGAATCCGGAAATACAAGCATCCAAAGATGGCGTTCTTCTCGTAGAAGAGTCTTACTGGGAAATTAAGTATTTGCTATTGTTTATTGATTGAAGTTGCATTTGAACAGATACGCGATGTCTCTGGAAATGTTCGCATGCTGTTGATGAATAGACATTTCCCTCAACCAGAATGGCAGGAGTAGAATATACTGCAGTCGGCGGCGATTCCTATACGGAAAACCTAATTGGAACCTTGCTGGCCATTTTTGGTAATTTGCTTGTCAGCATCTCTGTAAGCATTCAGAAATACAGCCATGTAACATTAGCAGGGACCAAGGACCCCCGTGCCTTCTACCGAACCAAAACATGGTGGTGTGGCCTGGTACTTACCGTTCTAGGAGAAGCAGCCAACTTTGTCTCCTATGCCTTTGCACCTTTATCTCTAATAGCTCCATTGAATGCAGTGTCTGTCATAGCAAGTTCAATCTTAGGTTTCATTTTCCTGAGAGAGAAATGGAAGCCAAAGGAATTTTTAAAGCGATACGTTTTGTCTTTCCTTGGATGTATCTTGACGGTAGCCGGGACCTACCTCTTTGCCACGTTCGGACCCAACTATCACCAGAAACTTACTGCAGAGAACATAGTGAAACAGGTCGTAGGATGGCCCTTCCTCTTGTATGTGTTCCTGGAGATTATTGCCTTCTGTCTTCTGCTGTACTTCTACAAGCAGCGCAACGCTAATCACCTTGTTGTCATTCTCCTGCTGGTGGCGCTGCTCGGTTCTGTGACTGTGATCACAGTGAAAGCAGTGGCAGGCATGCTGGTCCTCAGCGTCCAGGGCACCATGCAGCTCAACTACCCCATCTTCTACGTCATGTTTGTCTGCATGGTTACCACTGTGGTCTTCCAGGCTACGTTTCTCTCCCAGGCTACTCACCTGTACGACTCCTCCATGATAGCCTGTGTGAACTACATCTTATCCACATCCTTTGCGATTGTCGCAGGAGCCATATTTTACCTGGAGTTTAATCACGAAGACATTCTTCACATCTGCATGTTTTTGTTGGGATGTTTATCTTGTTTCCTGGGAGTCTTCCTGATTACCAAGAACAGGAAAAGGCTAAAGACCTTTGAACCCTATGTGACAATGGACATGTCGCAAGGTAATGAAGGTATTCCCACCATTCACGACAAGGGCTGGCGAGCAGTGCAGCCGGACTATAACGGTTCCTTTTCCTACGGTGCCCTGGTTAACAATGACAGCGTGGCGCCCGCCACTCTACCAGAGCTGGATCATGACCAGCTGGCAGTCACACCCAGTCCCACCGCTGCCCCCTATAGTTCGGCTGACCTGAAGAACGACTGAGGCACCTTTCAGACGTGCTTCAACCTTCCCCTCCGTAGGTTGCGTCTCAATCCTCCACCCTTCTCCTGAAGTGGTGCACACGTCTGGAAAAGGGTTCAGAATAGGGATGTAACCATAGACTCAGTGTAGGATGATGTCATCATTACTATGTTACCCCCATCTGGCCATGTCTAACAATAAGGAAGTGTTTTGTGGGTTGTCAGAATCATGCtgtacagcagtggttcccaaactgtggggtaccccccccaaaataaacatttatgattgttatttttttttggggggggggcacccaGTCCAActttcaacttactcttgaaaaGTTTTAGTAGTAGAATGCAGAAGGTGCAACTTCTAAATTGGGTAGtacatcatcagttcctcttgtcatgtcagtcattgcctTCCTTAGTGAGCTATGTATAACCTGTCAGAAATGTCCCGATCAACTATCCCATGTTGGCTAACTTTTTCTAGATAGGTTTTTTTAGCCCTTGGATtttatgtttgagtcactcaaatatcacatttaaacaTTACAAAATGTATAAATTTGctttaaatgggggggggggggtagttcccCAAAACTGGAAGGGGTGTCTGAGtgaaagtttgggaacccctacTCTACAGTAATTCAACTGAGCTGTACACTCTTCTTTTAATGTCTTCCTATCTACGGACTGCAATGAGGGACATTTCAACCATGAGACATTAGCTTTATTCCTGCAAATCATTCCAAGAAAGGTACTGAAGTATCCTGAAGTTGTCACTGACCACGGACAAACATCGACCTGGATCCAGGCCCATAGACATGTCATACCTTTGGACATTAATGTGCCTTAGACTAAAGCACCCTGCCTGTTTCTCCCTGCTGCTGTGTGTTCGCCACATAAGATTGAGTGACTTATTCCATGTTCATGCATTTCTGCAGGACTTCTTTCAATAGACTTGCCAATGAATACTGCAGTTTTCCTTGTATGTTTTGCTTGAGCAGTTGAAGTCACCCCACAATTCTGCCTCTGACGAGTAAGACGGTGTACGACTGCTTAGTCCAAAAATGACCAAAATGCTTATAAACTGTTATTGTTTTAAGTTATTTTAGTTGCATTTGAATCACCAAGTTGTAGTTGGGACTATGGTCTTAAATGCACAATGATTGTGTGAATTTCATGTAAAActgagaagagaaaaaaaaagtaacatATTTATTGTGTTTGAAGCTTAATGTGATAAAAGTTGGACGGCTTTATTCAAGTGGTCTTCTTGTGTTAGGAATGGATTTGACGCTCGGGCTTCGAATCTACATAGCGTCTGActgggagtgctgatctaggatcaggtccacccTGTCCATGTAATCCTGGATCAGAAACTCCAACTCTTGAGACGCTTTGTGGCTACGGGCCGAGTTCTGCTCACCACACTATCCATTTATAACAATGTCAATGAGTGTGACGCCACTTTTCcgctcttttaaaaaaaaatacatatgttTTTAAGTTGGGATCTACCTTTAGTTTAGCTGCGTTTATTATGTGGACTAAAGGGGATTCTGAATGTCTTAAGTTATATAGATGTTATGACAATTTCCTTGTATCACTGTGCAAGCTAAACCAATATGAAGAAATGTCCAATGAGTGACTGAGCTGATTTAGAATAGACTACTGACGTCTCTGGTCAACGCTTGTTGTTTGTCTTTCTGCCAGTATTTTCAATGAATAGAAAATCCAGAGGTACTGACACGACCAATGAGCTCACAGTATACTATTGTTTTCTTCCTGTAATGAATGATTTGTAACCCTTATTAACCTCATTGCCACCACTGTTGCTGTATTATGAACTAGGTAAGCAAATAAATAATATACTACTGAC
>XM_036955158.1
CGTAACAGCTGTGTGTAAAATAGAATCCGGAAATACAAGCATCCAAAGATGGCGTTCTTCTCGTAGAAGAGTCTTACTGGGAAATTAAGTATTTGCTATTGTTTATTGATTGAAGTTGCATTTGAACAGATACGCGATGTCTCTGGAAATGTTCGCATGCTGTTGATGAATAGACATTTCCCTCAACCAGAATGGCAGGAGTAGAATATACTGCAGTCGGCGGCGATTCCTATACGGAAAACCTAATTGGAACCTTGCTGGCCATTTTTGGTAATTTGCTTGTCAGCATCTCTGTAAGCATTCAGAAATACAGCCATGTAACATTAGCAGGGACCAAGGACCCCCGTGCCTTCTACCGAACCAAAACATGGTGGTGTGGCCTGGTACTTACCGTTCTAGGAGAAGCAGCCAACTTTGTCTCCTATGCCTTTGCACCTTTATCTCTAATAGCTCCATTGAATGCAGTGTCTGTCATAGCAAGTTCAATCTTAGGTTTCATTTTCCTGAGAGAGAAATGGAAGCCAAAGGAATTTTTAAAGCGATACGTTTTGTCTTTCCTTGGATGTATCTTGACGGTAGCCGGGACCTACCTCTTTGCCACGTTCGGACCCAACTATCACCAGAAACTTACTGCAGAGAACATAGTGAAACAGGTCGTAGGATGGCCCTTCCTCTTGTATGTGTTCCTGGAGATTATTGCCTTCTGTCTTCTGCTGTACTTCTACAAGCAGCGCAACGCTAATCACCTTGTTGTCATTCTCCTGCTGGTGGCGCTGCTCGGTTCTGTGACTGTGATCACAGTGAAAGCAGTGGCAGGCATGCTGGTCCTCAGCGTCCAGGGCACCATGCAGCTCAACTACCCCATCTTCTACGTCATGTTTGTCTGCATGGTTACCACTGTGGTCTTCCAGGCTACGTTTCTCTCCCAGGCTACTCACCTGTACGACTCCTCCATGATAGCCTGTGTGAACTACATCTTATCCACATCCTTTGCGATTGTCGCAGGAGCCATATTTTACCTGGAGTTTAATCACGAAGACATTCTTCACATCTGCATGTTTTTGTTGGGATGTTTATCTTGTTTCCTGGGAGTCTTCCTGATTACCAAGAACAGGAAAAGGCTAAAGACCTTTGAACCCTATGTGACAATGGACATGTCGCAAGGTATTCCCACCATTCACGACAAGGGCTGGCGAGCAGTGCAGCCGGACTATAACGGTTCCTTTTCCTACGGTGCCCTGGTTAACAATGACAGCGTGGCGCCCGCCACTCTACCAGAGCTGGATCATGACCAGCTGGCAGTCACACCCAGTCCCACCGCTGCCCCCTATAGTTCGGCTGACCTGAAGAACGACTGAGGCACCTTTCAGACGTGCTTCAACCTTCCCCTCCGTAGGTTGCGTCTCAATCCTCCACCCTTCTCCTGAAGTGGTGCACACGTCTGGAAAAGGGTTCAGAATAGGGATGTAACCATAGACTCAGTGTAGGATGATGTCATCATTACTATGTTACCCCCATCTGGCCATGTCTAACAATAAGGAAGTGTTTTGTGGGTTGTCAGAATCATGCtgtacagcagtggttcccaaactgtggggtaccccccccaaaataaacatttatgattgttatttttttttggggggggggcacccaGTCCAActttcaacttactcttgaaaaGTTTTAGTAGTAGAATGCAGAAGGTGCAACTTCTAAATTGGGTAGtacatcatcagttcctcttgtcatgtcagtcattgcctTCCTTAGTGAGCTATGTATAACCTGTCAGAAATGTCCCGATCAACTATCCCATGTTGGCTAACTTTTTCTAGATAGGTTTTTTTAGCCCTTGGATtttatgtttgagtcactcaaatatcacatttaaacaTTACAAAATGTATAAATTTGctttaaatgggggggggggggtagttcccCAAAACTGGAAGGGGTGTCTGAGtgaaagtttgggaacccctacTCTACAGTAATTCAACTGAGCTGTACACTCTTCTTTTAATGTCTTCCTATCTACGGACTGCAATGAGGGACATTTCAACCATGAGACATTAGCTTTATTCCTGCAAATCATTCCAAGAAAGGTACTGAAGTATCCTGAAGTTGTCACTGACCACGGACAAACATCGACCTGGATCCAGGCCCATAGACATGTCATACCTTTGGACATTAATGTGCCTTAGACTAAAGCACCCTGCCTGTTTCTCCCTGCTGCTGTGTGTTCGCCACATAAGATTGAGTGACTTATTCCATGTTCATGCATTTCTGCAGGACTTCTTTCAATAGACTTGCCAATGAATACTGCAGTTTTCCTTGTATGTTTTGCTTGAGCAGTTGAAGTCACCCCACAATTCTGCCTCTGACGAGTAAGACGGTGTACGACTGCTTAGTCCAAAAATGACCAAAATGCTTATAAACTGTTATTGTTTTAAGTTATTTTAGTTGCATTTGAATCACCAAGTTGTAGTTGGGACTATGGTCTTAAATGCACAATGATTGTGTGAATTTCATGTAAAActgagaagagaaaaaaaaagtaacatATTTATTGTGTTTGAAGCTTAATGTGATAAAAGTTGGACGGCTTTATTCAAGTGGTCTTCTTGTGTTAGGAATGGATTTGACGCTCGGGCTTCGAATCTACATAGCGTCTGActgggagtgctgatctaggatcaggtccacccTGTCCATGTAATCCTGGATCAGAAACTCCAACTCTTGAGACGCTTTGTGGCTACGGGCCGAGTTCTGCTCACCACACTATCCATTTATAACAATGTCAATGAGTGTGACGCCACTTTTCcgctcttttaaaaaaaaatacatatgttTTTAAGTTGGGATCTACCTTTAGTTTAGCTGCGTTTATTATGTGGACTAAAGGGGATTCTGAATGTCTTAAGTTATATAGATGTTATGACAATTTCCTTGTATCACTGTGCAAGCTAAACCAATATGAAGAAATGTCCAATGAGTGACTGAGCTGATTTAGAATAGACTACTGACGTCTCTGGTCAACGCTTGTTGTTTGTCTTTCTGCCAGTATTTTCAATGAATAGAAAATCCAGAGGTACTGACACGACCAATGAGCTCACAGTATACTATTGTTTTCTTCCTGTAATGAATGATTTGTAACCCTTATTAACCTCATTGCCACCACTGTTGCTGTATTATGAACTAGGTAAGCAAATAAATAATATACTACTGAC

Function

symbol description
nipal3 Predicted to enable magnesium ion transmembrane transporter activity. Predicted to be involved in magnesium ion transport. Predicted to be integral component of membrane. Predicted to be active in membrane. Orthologous to human NIPAL3 (NIPA like domain containing 3).

NR:

description
NIPA-like protein 3

GO:

id name namespace
GO:0034220 ion transmembrane transport biological_process
GO:0015693 magnesium ion transport biological_process
GO:0016020 membrane cellular_component
GO:0015095 magnesium ion transmembrane transporter activity molecular_function

KEGG:

id description
K22733 NIPA, SLC57A2S; magnesium transporter

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036955157.1 False 3248 mRNA 0.43 11 57554950 57563838
XM_036955158.1 True 3239 mRNA 0.43 11 57554950 57563838

Neighbor

gene id symbol gene type direction distance location
LOC110498392 LOC106612959 coding upstream 52197 57400757 ~ 57502753 (+)
LOC110498167 LOC106612547 coding upstream 280348 57215239 ~ 57274602 (+)
LOC110498389 LOC106612499 coding upstream 357995 57176839 ~ 57196955 (+)
LOC118941498 LOC106609620 coding upstream 387893 57069851 ~ 57167057 (+)
LOC118936466 LOC106609620 coding upstream 410832 57141510 ~ 57144118 (+)
LOC110498171 rcan3 coding downstream 439 57564277 ~ 57648271 (+)
slc25a47b LOC106560560 coding downstream 262838 57826676 ~ 57830485 (+)
LOC110498394 NA coding downstream 294032 57857870 ~ 57888014 (+)
LOC110498180 dlk1 coding downstream 470293 58034131 ~ 58040622 (+)
dio3a dio3 coding downstream 546672 58110510 ~ 58111944 (+)
G1642237 NA non-coding upstream 25286 57528969 ~ 57529664 (+)
G1642195 NA non-coding upstream 114266 57437757 ~ 57440684 (+)
G1642080 NA non-coding upstream 239887 57283124 ~ 57315063 (+)
G1642101 NA non-coding upstream 275413 57279260 ~ 57279537 (+)
G1642060 NA non-coding upstream 276579 57277327 ~ 57278371 (+)
G1642268 NA non-coding downstream 41731 57605569 ~ 57605914 (+)
G1642283 NA non-coding downstream 61663 57625501 ~ 57625762 (+)
G1642285 NA non-coding downstream 65322 57629160 ~ 57629514 (+)
G1642579 NA non-coding downstream 106768 57670606 ~ 57673486 (+)
G1642589 NA non-coding downstream 130596 57694434 ~ 57694786 (+)
G1642062 NA other upstream 278173 57275053 ~ 57276777 (+)
G1641935 NA other upstream 411025 57135826 ~ 57143925 (+)
G1641713 LOC106560842 other upstream 724641 56825952 ~ 56830309 (+)
G1641407 NA other upstream 1043853 56509929 ~ 56511097 (+)
G1641405 NA other upstream 1049053 56500157 ~ 56505897 (+)
G1642565 NA other downstream 92511 57656349 ~ 57682553 (+)
G1642993 LOC106611338 other downstream 600639 58164477 ~ 58176485 (+)
LOC110498189 klhdc1 other downstream 729498 58293310 ~ 58298259 (+)
G1644123 NA other downstream 1490685 59054523 ~ 59057223 (+)
G1644280 NA other downstream 1632846 59196684 ~ 59197013 (+)

Expression


Co-expression Network