LOC110498171 (rcan3)


Basic Information

Item Value
gene id LOC110498171
gene name rcan3
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 57564277 ~ 57648271 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021574781.2
CTGGTGTAGGCTGCATCAGATATTGTACAATAATCTAATGTAAAGAAACACTGCGTCAGAGAGATACATCAACAACTGTAACCAACTGTTTTTCTTCAGGCGACAGTGAATGTTGATATTTCCGGCTGGACTGTCTTGACCAGAAATCATATTGACATTCTggaatatttattttttgctcaaTGATAGTGtcTTGTCCCAGCTAGAAGACCCAGAAAAGTTCCACCCCCCCTAGCGGCtcacctctccatcctctgtTCCCTGCCTCTGTGTCTTTGGACCTGGGTAGCCATGCTGCGGGAGGGGGCCAAGGCCTGGAGCAACGTCTCGGAGGCCTACAGCAGCGaccctgaagaggaggaggaggaggacatggTATGTGAGGAAGAcgaggacagagaggaagagatgatGGACCTGAGTGAGCTGCCCACCACCCTGTTCGCCTGCAGTGTCCACGAGGCCGTGTTCGAGGAGGACCGCCACCGGgAGAGGTTCGAGGCCCTGTTCAGGATCTATGACGAACAGACGTCCTTCCAGATGTTCAAGAGCTTCAGGCGAGTCCGCATCAGTTTCAGCACTCCGGAGGCGGCCGCCCGCGCTCGCATCGAGCTCCATGAGACTGAGTTCAACGGCAAGCAGCTCAAGCTCTACTTTGCCCAGATTCAGAATTCTGGGGAGGATATAGACAAGTCGTACCTGGCTCCTCCTGCTCCCGTCAAACAGTTCCTCATCTCTCCCCCTGCCTCGCCACCCGTGGGCTGGAGCCAGAGCGAAGACGCAACGCCTGTTATCAACTATGACCTGCTGTGCGCAGTGGCCAAGCTGGGCCcagGGGAGAAGTATGAACTGCATGCGGGCACTGAGTCAACCCCCAGCGTTGTGGTGCATGTGTGCGACAGCGATGCAGAGGATGACAACGACGAAGCGCGGCCCAAGCAGAAACAGCAGATTGTCCAAACCCGGCGCCCCGACGGCCCGTCGCAAGTCCTGAACTAG
>XM_021574780.2
CTGGTGTAGGCTGCATCAGATATTGTACAATAATCTAATGTAAAGAAACACTGCGTCAGAGAGATACATCAACAACTGTAACCAACTGTTTTTCTTCAGGCGACAGTGAATGTTGATATTTCCGGCTGGACTGTCTTGACCAGAAATCATATTGACATTCTggaatatttattttttgctcaaTGATAGTGtcTTGTCCCAGCTAGAAGACCCAGAAAAGTTCCACCCCCCCTAGCGGCtcacctctccatcctctgtTCCCTGCCTCTGTGTCTTTGGACCTGGGTAGCCATGCTGCGGGAGGGGGCCAAGGCCTGGAGCAACGTCTCGGAGGCCTACAGCAGCGaccctgaagaggaggaggaggaggacatggTATGTGAGGAAGAcgaggacagagaggaagagatgatGGACCTGAGTGAGCTGCCCACCACCCTGTTCGCCTGCAGTGTCCACGAGGCCGTGTTCGAGGAGGACCGCCACCGGCTACGAAAGGGAATGCCATCTATAAATATGAAACTGGAGATGGTGACCATCATCGCCTGCGAGGTAGACACAGAGGTGTTTACGTCCGACAAGCTGCAGgAGAGGTTCGAGGCCCTGTTCAGGATCTATGACGAACAGACGTCCTTCCAGATGTTCAAGAGCTTCAGGCGAGTCCGCATCAGTTTCAGCACTCCGGAGGCGGCCGCCCGCGCTCGCATCGAGCTCCATGAGACTGAGTTCAACGGCAAGCAGCTCAAGCTCTACTTTGCCCAGATTCAGAATTCTGGGGAGGATATAGACAAGTCGTACCTGGCTCCTCCTGCTCCCGTCAAACAGTTCCTCATCTCTCCCCCTGCCTCGCCACCCGTGGGCTGGAGCCAGAGCGAAGACGCAACGCCTGTTATCAACTATGACCTGCTGTGCGCAGTGGCCAAGCTGGGCCcagGGGAGAAGTATGAACTGCATGCGGGCACTGAGTCAACCCCCAGCGTTGTGGTGCATGTGTGCGACAGCGATGCAGAGGATGACAACGACGAAGCGCGGCCCAAGCAGAAACAGCAGATTGTCCAAACCCGGCGCCCCGACGGCCCGTCGCAAGTCCTGAACTAGGACGCCCGTTACGGACCCCACTCCTacgaccccaacacacacacgcaccaagccctgtcttctctgtctcaggagtCGCACAGCAAGACAACGCCCCTCATTTCAGTTCAACCCAAAACACACAAACAGCAGACAGTTGGTGGTGTTTGTGGAGGGAGCATGGCTATTGGATGGGATGAGGCGGCCTGGCCTGTATGGACGATGGAGGATGGATGAGATTTACACACACTCATCACACTcaaaggaaagggagggaggggtgagggtgCCTAACTCTTGACCCCTGACCTCGGATCAGCCAGGGGCAGTAATGTAACAACTTGTCCTCCTAAAGCAGGCCCCCTGTCATAGATTATACACTCAGCTCTCATCTGTAGTAGTTCTTCTGTAGTAGTACTTATTTCCTTCCTGCTTACTGTCACTGGTTAGTTGTGTCACGCAGTGGTCTTTCGGGGACATGCTATACCTCTAATGACGTTTTGAGTTTTTAAACttttgttttatatacatttgttcTTCTGATTGTTTGTCTGTTCTTCTTCTGCTATTTATGATATCAGCTGATTGGTTGTTTCTGCTAACACAGAATTAGGATTGGTTGTCTGGTATTCCTCTTCTTGTCTTCATGTATATATAAGAACATACTCCTACAGAGACTCAAACACTAAACTGTTATATAAAGCAAAGGAACCTATGGAGGTCACACTAATTAGCAACAGGTGGCCATGTGGTAACATCAAAGTTGTGGTGGTGTTtgcattttatttcatttttgggGAGGGGTCTGCTTATGTCCTTTTAATCAGAGAGGTGTCAATTGACGTGTTGCTGAACTAGGTGTGCATTCTTCTtaacatgtatttgataccacaAACAATTGTTTTTTTGCATGCTTACTAACGTAGTCGGGAGCTGAGGCATTTTATACTGGTCAAGATGACAGGGAAATGGAATGAAGCTTTTGACGACACGCATATCTCTAGTTTTATAGTGtcaggtgagaggggagaggctGGCTGGGTGAGTAAAAAGACAGAGTGAATGAGACCTTTACAGTGTGAGTAAAAGCCTAAGAGTTGGGCTTTAGGATAGGAGTAAAAGCCTAAGAGTTGGGCTTTAGGATAGGAGTAAAAGCCTAAGAGTTGAGCTTTAGGATACAAGTAAAGCCTAAGAGTTGGGCTTTAGGATAGGAATAAAAGCCTAAGAGTTGAGCTTTAGAGTAAAAGTAAAAGCTAAGAGTTGGGCTCTAGAGTAGAAGCAAAAACTAAGAGTTGAGCTTTAGAGTAGAAGTAAAGGCTAAGAGTTGGGCTTTAGAGTAGAAGTAAAGGCTAAGATTAATCTCCTACAGGAATGTTGGCATTTTCAGAGGGCATTTATTTTTATTCCATCTTTCCGGTAATGTTTTGGGGTCTTTTTATGATATCAACACAGCTTTCTTCTTCTCAGACCTAAATGGCTTGTTTTACACTGAAAATCTCCCAATCTCTCAATCTCTGGAGCTATACTAAAGGAATGTCCTGATTTTCCTCTGTCAGCTCTTAAAATATAAGACTGCTTCTTAGTTCTTGCTGTAAATAGCTCAATAGTCATTAGGTGGAAAAAGTCCATTAGGTTTTAATGATTGACATTAAGCGTTGGTGAGAAATTGAAAAAGTTTCCTTTGCCACCCAGCCTCTGGAGATATAAAAACAAAGCCTTCATCTCACCTTGCAGTCACAGCACAAACCTTTGGAAACTCAAGAAACTAAagagaaagtttttttttttaaagttattaaAAATTAGTATTATTGTCACATGAAATGTgaagggtcagccatagtagtaaaGCAAATTACTCTAATTTGGAATACTGCTGCATTAACAGTTGTTACTTTGCTCACAGCAACTCCCAAATACAATTAATAATTACTTAATTTACTGTGCTTTTAGTCATTCATTTGAATCCTATCCTAAATATCTCAGGAGTAAATTTAAGAGTAACTTTTACCAGAATGATAGATGTTTCTCCTGACCATGCACTTTGAATAACAACAAGCATAAAATGTCAACTATAATGTAATGTGTCTGTTATTGGTCTGTCTGCATGCGAGCACTTTATTGTCAGCAGTCTTTTTTCTTCTCACTGTAAAGGCAGTCTTTTTTCTTCTCACTGTAAAGGCAGTCTTTTTTCTTCTCACTGTAAAGGCAGTCTTTTTTCTTCTCACTGTAAAGGCAGTCTTTTTTCTTCTCACTGTAAAGGCAGTCTTTTTTCTTCTCACTGTAAAGGCAGTCTTTTTTCTTCTCACTGTAAAGGCAGTCTTTTTTTCTTCTCACTGTAAAGGCAgtcttttttcttctcattttagAGCCAGTCTTGCTAGAGAGAATGTTCTGTATttcttttgttatttttttaatcttCTGTTTTTCAAGATGAACACCTGGGTAGCCTTCTCACTAGCAGAGCAGCGTGAGTTTAACACTCAACATCTCTTGCTACTGGGGTTTTTGAAGGCTCGGAGGCCTTTGGATATATGTGCAGGAGTGTACCACTGAATAGGTGTGGTAGGAAGAACAGGAACATGTGTCTTTTGAGATGATGGTTGGTTGCAACCACAGAACAAAGGTGTGTTTTTGTTAGTGTTTGTCCCTGGAACATAATTTCAAGTGCAAGCTTTGTCCTTTCAGAGGTGACTTCTAAAAACCAAGCAGCCAGCGAGTGTTGAAACGCAATGCAATGGCACAGAAACTTTCTAGTTGTGCTGACTGGTGATAATATTGCTGATTGATGACTAAGATAATGATTATGTTGACGAGGCTGATCTGATGTTTTCTACCGACTGCTGTCTCTGAAACTGGGAGCATTTTGGGTCACAGGCGAAACGAGAAACATTTATAGTGATGTTGTTGCCGACGCCAGTTCCAGTATGCGGCTAAAAAAATGTTGGCTTCTAATTTTATGTTGAtgtaaagataaaaaataaacaaaaagttCTGAAATGCTCGATCAAATCAATTCTTATTGTGTCGTGTTAAAAACTGActcaatgttgttttttttggaaCGTCTACAAAGCAAAACGGTCAATACTGTCCGTTACTGTTGCATACTGTTCTGTTGAAATCTGAATATTATGTCTAGTACTGTAGTTATCCAGAACACGAAGTAGCAATCAAGCAATAATTTACAGTTATATACAGGTATCTGTATTTTATGTTGTGTACTAATTTCCAGAGTTTGTTGTCTCTGACTGTTACAACAGTACTTGCTTATATTTGTGTGGTATGATGGTCATTCGTTTCACATGAGAAATACATAAAGAACTATTCTTAAA

Function

symbol description
rcan3 Predicted to enable calcium-dependent protein serine/threonine phosphatase regulator activity. Predicted to be involved in calcium-mediated signaling. Predicted to be active in cytoplasm and nucleus. Is expressed in central nervous system; otic placode; otic vesicle; paraxial mesoderm; and retina. Orthologous to human RCAN3 (RCAN family member 3).

NR:

description
calcipressin-2-like isoform X1

GO:

id name namespace
GO:0019722 calcium-mediated signaling biological_process
GO:0000166 nucleotide binding molecular_function

KEGG:

id description
K17905 RCAN3; calcipression-3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021574781.2 False 999 mRNA 0.56 5 57564277 57644954
XM_021574780.2 True 4415 mRNA 0.43 6 57564277 57648271

Neighbor

gene id symbol gene type direction distance location
nipal3 nipal3 coding upstream 439 57554950 ~ 57563838 (+)
LOC110498392 LOC106612959 coding upstream 61524 57400757 ~ 57502753 (+)
LOC110498167 LOC106612547 coding upstream 289675 57215239 ~ 57274602 (+)
LOC110498389 LOC106612499 coding upstream 367322 57176839 ~ 57196955 (+)
LOC118941498 LOC106609620 coding upstream 397220 57069851 ~ 57167057 (+)
slc25a47b LOC106560560 coding downstream 178405 57826676 ~ 57830485 (+)
LOC110498394 NA coding downstream 209599 57857870 ~ 57888014 (+)
LOC110498180 dlk1 coding downstream 385860 58034131 ~ 58040622 (+)
dio3a dio3 coding downstream 462239 58110510 ~ 58111944 (+)
dync1h1 dync1h1 coding downstream 544708 58192979 ~ 58248705 (+)
G1642237 NA non-coding upstream 34613 57528969 ~ 57529664 (+)
G1642195 NA non-coding upstream 123593 57437757 ~ 57440684 (+)
G1642080 NA non-coding upstream 249214 57283124 ~ 57315063 (+)
G1642101 NA non-coding upstream 284740 57279260 ~ 57279537 (+)
G1642060 NA non-coding upstream 285906 57277327 ~ 57278371 (+)
G1642579 NA non-coding downstream 22335 57670606 ~ 57673486 (+)
G1642589 NA non-coding downstream 46163 57694434 ~ 57694786 (+)
G1642593 NA non-coding downstream 54329 57702600 ~ 57703036 (+)
G1642600 NA non-coding downstream 68683 57716954 ~ 57720177 (+)
G1642720 NA non-coding downstream 161843 57810114 ~ 57814612 (+)
G1642062 NA other upstream 287500 57275053 ~ 57276777 (+)
G1641935 NA other upstream 420352 57135826 ~ 57143925 (+)
G1641713 LOC106560842 other upstream 733968 56825952 ~ 56830309 (+)
G1641407 NA other upstream 1053180 56509929 ~ 56511097 (+)
G1641405 NA other upstream 1058380 56500157 ~ 56505897 (+)
G1642565 NA other downstream 8078 57656349 ~ 57682553 (+)
G1642993 LOC106611338 other downstream 516206 58164477 ~ 58176485 (+)
LOC110498189 klhdc1 other downstream 645065 58293310 ~ 58298259 (+)
G1644123 NA other downstream 1406252 59054523 ~ 59057223 (+)
G1644280 NA other downstream 1548413 59196684 ~ 59197013 (+)

Expression


Co-expression Network