LOC110498189 (klhdc1)


Basic Information

Item Value
gene id LOC110498189
gene name klhdc1
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 58293310 ~ 58298259 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021574808.2
TTCAAAGCAAAGATTCTACACAAGCCTCACTACCGCACGATTCTGCCGATATTTGCTGTTTGAAGTCAGCTGAGGTTTTCAAAACAGTGGGTATTCTCAAAAACACATGGATAAAGCAGCCAGACATGGAATCGTGTCAAATGTCTGGAGAGGTCGCACCCCCAATGTCAGGCACCTGTGGCTGCTCTTTGAATGGGGACATGTACATATTTGGGGGATGCAATGACAACGGACAGACCAATCAGCTTTACTGTGTCAACCTCCTGGATGGGAAATATAGCTGGAGAAAAGTGAACCATAAGAGTGGCTCATCTCCCTCACCCAGAGATAAGCGCACTTGTTGGGTTTTCAATGGCAGTGTTGTGCCCCTGACCCCAGAGCTGCCCGTGCAAGTGCAACACTTCGGAACAAAGGATACGTATGTGGAGGCAGAATAAGGGTGAAAAACAATGTATCTCAACACCTCTCTCCGTGGTTGCATTGACACAGACAACCTAAAGTGTCACAatgtgtcatgttctgacctttatttcctttgttttgtatttatttagtatggtcagggcgtgagttgggtgggcagtctatgtttgtttttctatgttttggggcatttctatgtttcggcctagta
>TU1879589
TCACTACCGCACGATTCTGCCGATATTTGCTGTTTGAAGTCAGCTGAGGTTTTCAAAACAGTGGGTATTCTCAAAAACACATGGATAAAGCAGCCAGACATGGAATCGTGTCAAATGTCTGGAGAGGTCGCACCCCCAATGTCAGGCACCTGTGGCTGCTCTTTGAATGGGGACATGTACATATTTGGGGGATGCAATGACAACGGACAGACCAATCAGCTTTACTGTGTCAACCTCCTGGATGGGAAATATAGCTGGAGAAAAGTGAACCATAAGAGTGGCTCATCTCCCTCACCCAGAGATAAGCGCACTTGTTGGGTTTTCAATGGCAGTGTTGTGCCCCTGACCCCAGAGCTGCCCGTGCAAGTGCAACACTTCGGAACAAAGGATACGTATGTGGAGGCAGAATAAGGGTGAAAAACAATGTATCTCAACACCTCTCTCCGTGGTTGCATTGACACAGACAACCTAAAGTGTCACAatgtgtcatgttctgacctttatttcctttgttttgtatttatttagtatggtcagggcgtgagttgggtgggcagtctatgtttgtttttctatgttttggg
>TU1879591
TCACTACCGCACGATTCTGCCGATATTTGCTGTTTGAAGTCAGCTGAGGTTTTCAAAACAGTGGGTATTCTCAAAAACACATGGATAAAGCAGCCAGACATGGAATCGTGTCAAATGTCTGGAGAGGTCGCACCCCCAATGTCAGGCACCTGTGGCTGCTCTTTGAATGGGGACATGTACATATTTGGGGGATGCAATGACAACGGACAGACCAATCAGTGTTGTGCCCCTGACCCCAGAGCTGCCCGTGCAAGTGCAACACTTCGGAACAAAGGATACGTATGTGGAGGCAGAATAAGGGTGAAAAACAATGTATCTCAACACCTCTCTCCGTGGTTGCATTGACACAGACAACCTAAAGTGTCACAatgtgtcatgttctgacctttatttcctttgttttgtatttatttagtatggtcagggcgtgagttgggtgggcagtctatgtttgtttttctatgttttggg

Function

symbol description
klhdc1 Enables ubiquitin ligase-substrate adaptor activity. Involved in ubiquitin-dependent protein catabolic process via the C-end degron rule pathway. Is active in Cul5-RING ubiquitin ligase complex and cytosol.

NR:

description
kelch domain-containing protein 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021574808.2 False 634 mRNA 0.46 4 58293310 58298259
TU1879589 False 584 TUCP 0.46 4 58293336 58298235
TU1879591 True 471 lncRNA 0.46 3 58293336 58298235

Neighbor

gene id symbol gene type direction distance location
wdr20a LOC106611292 coding upstream 33918 58251569 ~ 58259392 (+)
dync1h1 dync1h1 coding upstream 44605 58192979 ~ 58248705 (+)
LOC118941556 NA coding upstream 46775 58246466 ~ 58246535 (+)
LOC118941559 NA coding upstream 49913 58243326 ~ 58243397 (+)
LOC118941558 NA coding upstream 56990 58236249 ~ 58236320 (+)
dnaaf2 klhdc1 coding downstream 1841 58300100 ~ 58308174 (+)
LOC110498192 LOC106610665 coding downstream 84285 58382544 ~ 58566706 (+)
mis18bp1 mis18bp1 coding downstream 308349 58606103 ~ 58625926 (+)
degs2 degs2 coding downstream 340786 58639045 ~ 58648752 (+)
disp2 disp2 coding downstream 557472 58855731 ~ 58868973 (+)
G1643049 pole2 non-coding upstream 3750 58288747 ~ 58289560 (+)
G1643045 NA non-coding upstream 16381 58276577 ~ 58276929 (+)
G1642937 NA non-coding upstream 30355 58262372 ~ 58262955 (+)
G1642991 NA non-coding upstream 151274 58141805 ~ 58142036 (+)
G1642946 NA non-coding upstream 211194 58081726 ~ 58082116 (+)
G1643053 lrr1 non-coding downstream 10441 58308700 ~ 58310184 (+)
G1643056 lrr1 non-coding downstream 12062 58310321 ~ 58311042 (+)
G1643062 NA non-coding downstream 14465 58312724 ~ 58312964 (+)
G1643063 lrr1 non-coding downstream 15501 58313760 ~ 58314423 (+)
G1643374 NA non-coding downstream 70564 58368823 ~ 58369053 (+)
G1642993 LOC106611338 other upstream 116825 58164477 ~ 58176485 (+)
G1642565 NA other upstream 610757 57656349 ~ 57682553 (+)
G1642062 NA other upstream 1016533 57275053 ~ 57276777 (+)
G1641935 NA other upstream 1149385 57135826 ~ 57143925 (+)
G1641713 LOC106560842 other upstream 1463001 56825952 ~ 56830309 (+)
G1644123 NA other downstream 756264 59054523 ~ 59057223 (+)
G1644280 NA other downstream 898425 59196684 ~ 59197013 (+)
G1644569 NA other downstream 1310341 59608600 ~ 59609394 (+)
G1644651 NA other downstream 1449725 59747984 ~ 59748345 (+)
LOC110498402 LOC106604468 other downstream 2085262 60382983 ~ 60392450 (+)
LOC118941557 NA coding upstream 57470 58235795 ~ 58235866 (+)

Expression


Co-expression Network