LOC110498192 (LOC106610665)


Basic Information

Item Value
gene id LOC110498192
gene name LOC106610665
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 58382544 ~ 58566706 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036955189.1
GGGAAGCGGAGGCTTGTCGTTTCAGCGCAGTACGTAGTGCACAGCATTACTGACCATCTCAGAACCAACACATCCTCTTCAAATAATAATTTGTACAAGACACTTTCAGATTAAAACGCGCACGTAACGACGAATCGTCGTTTGCTATTTCGAGAGACACAAACTCGAGGTTTTAGGTAACCTGCATCATGAGTCAAATACGCTTCTAAAACCGGGATTTATTATCCGCCGGGGATGGCACGTTCACGGTCTTTGGCCATAGTGCTAGCATGAACGCGTCACATCCAGCGGCTCAGTGTCAGCTTCTAGGAAAACCTTTTGCCTCGCTGTCCTCCGAACACTATGGCAAGCCTTTGAGAGGGAGGGAAAGCCGCAAGTGGATATCAGAATGTCTTTAATCTCCGTTTAGCAATGGAAGCTGCAGGAATCGGTATAAGCGTTTTCTCGAAAGAATTATCGGCGTTGCATTCTCGGTTACTTTTACAATGTCACAATCAAGGAGATCCTGTTGAGGCTTCAAAGTATGCACGGACATTGGCGATTTTGACTGATGTGCCATTGTAGGCACAACATTTACCAGTTGTTATCCATCGCTGTGAATCATTTATGCTATTACCTGCTGTCCCTGCTCCCACTGAAATATTGACAGAATCAAATTCATTTCATAGAGCATCAAATAAACATTCGTTACCCGGTGTCAATGGTGTCTCAACCAGATTTACGCTGAATCCTGGTGCGGAACCGCGGGAACTGAGTTCGGACAGGCTGCATCTCGCCTTGGGAAGAACCTATCACCATCGAAGTGGATATGTTGACATTAACGTGAAGATGGGTTTAGTTTTCGGTCTCTTGTGGCTGTTCAACATCTTTTTGGAGGGCATTCATTGCCAAGGAGTCTATGCACCTCCTACAGTCCGAATCATCCATTCTGGCCATGCATGCAACGTCGAGGAGGAGCGCTATACCGAACGCGTCTACACCATCCGGGAGGGAGAGACCCTGGAGCTAGCCTGTCTGGTCTCGGGCCACCCTCGACCTCAGATCCGATGGACCAAAACAGCCGGTAGCGCCTCGGACCGCTTCCAGGACTCCAGTGTGTTCAACGAGACCCTGCGCATCACCCGCATCCAGAGACTCCAGGGAGGACGCTACTACTGCAAGGCTGAGAACGGCCTGGGCTCCCCGGCCATCAAGTCCATCCGAGTGGACGTCTACTATTTGGATGATCCCATTGTAACTGTCCACCAGAGCATCGGGGAGGCTAAGGAACAGTTCTACTATGAGAGGACGGTGTTCCTGCGCTGCATGGCTAACTCCAACCCCCCGGTGCGCTACAGCTGGAGGCGTGGCCAAGAATTCCTGTCCCAAGGCTCGGATAAGGGCGTGGAGATCTACGAGCCCTTCTTCACACAAGGGGAGACCAAGATTCTAAAGCTGAAGAACCTTCGACCTCAGGATTACGCCAACTACAGCTGCATCGCCTCGGTCCGGAATGTGTGTGGTATCACCAACAAGAATGTCCTCTTCAAACTCTCCAACAAAACAGCATCCCCCACCATTAAGCTGCTGGTGGAGGACCCCATCGTGGTGAACCCCGGGCAGACCGTGACCCTGGTGTGTGTGACCTCCGGGGGTGATCCCACACCCACACTTACCTGGGTGCACAGCGCAGACGAGCTGCCCAAGAAGAGCGTCCTTAACGGAGGGACCCTCACGTTGCCCGCCATCTCCATAGAAGAAGCAGGTGTTTACAGCTGTGTGGCCAGCAACAACGTGGGCAACCCGGCTAAGAAGTCTACCACCATTGTGGTCCGAGggctAAAGAAGGGGCGGTTCTGGATCACGCCCGACCCGTACCACAACGACGACAACATCCAGATTGGCCGTGAGGTTAAGATTTCATGCCAGGTGGAGGCCACGCCCCCAGAGGAGCTTCTGTTCAGCTGGCTGAAGAATGGACGGCCGCTGCGCAGCTCAGAGCGCATGGTCATCACCCACACTGACCCGGAAGTCCAGCCAGGCACCACCAACCTGGACATCATCGACCTCAAGTTCACCGACTTCGGCACCTACACCTGTGTGGCAGTGCTGAAGAACGGCGGCATCCCCGAGATCAGCATCGACGTCAATATCTCTTCGACCACAGTCCCCCCGGAATTAACGGTGCCGCGGGACAAATCCCCCTTGGTGGTCCAGGAGGGTGACACGGTGGAACTCCAGTGCTTGGTCTCCGGGAAGCCTAAGCCAATCATCCTCTGGTCGAGGGCCGACAAAGAGGTGCCCATGCCCGACGGCGGCCTTCAGACAGAGAGCTACGACGGCGCACTGCGCATCGTGAATGTGTCCCGCGAGATGACGGGAACCTACCGCTGCGCCACCAGCCAGTACAACGGCTTCAACGTCAAGCCCCGGGAAGCACTGGTGGAGCTCACGGTGCAGTATCCGCCGGCGGTGGAGCCACTGTTCACAGAGATCCGCCAGGGTTTGGGTCGCGCCTTCACCCTCAACTGCCGCATGCTGCGAGCCCACCCTTCCAAGGTGCTCAAGTACGAGTGGAAGCTGGGCACCCGGCTGCTGACCATTGGCCAGTTGGATCAGCGCGACGAGACTGACTACCATGTCAGAGCCCTCAACAGGGAGGGCTACGGGGAGTACACCTGTGAAGTGACCAATGAGGCCGGGGCGGGTGCCTGCAGATTCTTAGTCACAGGGAGGGCCTATGCCCCAGAGTTCTACTATGACACGTACAGTGCGTTGTGGCAGAACCGGCCCAGGGTCTACGGCTTCAAGCTACAGTGGACCCAGCAGAACCCGCTGTCTGTGGACCGCATCGTGGCCTACCGACTGGGGATCAAACAGACGGGCCAATCGAGGTGGTGGGAGCAAGAGATCCCCATGGAGGGAGCGATCGCCAAGGGCGAGCTGATCACCCACAACCTGACGGAGCTCATCAAGCCAGAGGCCTACCTGGTGCGCCTCACCCCCATCACACGCTTCGGGGAAGGAGACTCCACAGACAGAACCATCAGATACAGTGCTCCAGTCAACCCTCACTTGAGAGAGTTCCAGTGCAGCTTTGAGGACGAGGCCGTGTGTATGTTCACCCAGGACAAGAGGGATGACTTTGACTGGACCCGACACAGTGCCGCCACCAGAGACACCAAGTATACGCCCAACACAGGGCCCAGCAGTGACCGAGTGGGCTCCAAGCAAGGTTTCTACATGTATATCGAGACGTCTCGACCACGCCTGGAGGGAGAAAAGGCTCGACTGTTGACCCCCACTTTCAACGTCGCCCCCAAAAGCCCCTATGGGACTGTGACGTCCTCTCCAACCTACTGCTTTGGTTTCTACTACCATATGTATGGGAAACACATAGGAgcgttaaatgcttacttacgacaGAAGGGCCAGTCGGGCGCAGACAGTTCCGTGTGGACCCTGGTCGGGAACCAAGGAGACCGATGGAAGCAAGCCAAAGTCAACATTCACCCAACAGCCTCTTTCCAGTTGGTTCTGGAAGGAATTCGGGGTCCTGGGATAGAAGGGGATATCGCCATTGATGATGTCACCATTGAGGAAGGAGAATGTAAAGACCCTCCACACAACAATCTGAGATCACTGTCTCCTCCCACCGCGCACCATATATGTCAGTTCTTGGTCACACTgaccctggtgtttgtgggtcATCAGAGGtgacccctctctctcaggaGGAGCAACCTGATGCCGGCCCCACCCCTGTGGAAGAATCTGCAGACTTTGACTGTCTAAACCCCCAAAACTACCAAAGATTCACTCCTCTCCAGTCTTCAGGAGAGCAGCAGCAGTCCAGCGCTGGTCCAGGGTGGAGCATGCaggaataaataaaaaaaactcagtcaatcttgtttttttttctgaAATATGCACAGAGAGCATTCCAAGGTCAGGACTCCAGGGTCAGGATGGAGAGCCGGGTTCTCCATAGTAGACGCTCCAGTAGTAGGGGCTACACCTAATTTTTTCCCCCCAAGGTGAAGCCAGTCGAAGCAGAGTGTGGGTGCCATCATTGTGTATATTGGCTCAAGGATCGGAACGGAATGGTACATTTCTGTAAAGCACAAGGACACGTGATGTGGTCCCATTTTTTTTCTTTCCATTTTCCATATGTTATTTGTTTGCTGCTTGTCAAGGCCAAGGAATAACTATAATTCATTGCTTAATGAGATGGGTGTTGAAGAGGTTGATTTTATGTTAAGAGTGTAAATGTACGAAATTCACTCAATAACCCACATTGACCCGAAGCTATTTTTCTCATGAATATGTTAGAGACTGCTATTCCTCTTTGTGTTGTCGCTTTAACCCCTTTTAAAACTCAGAGGCTGCCTAGGGTCGGTTTCATCAAAATATGTATAAACAAACACGTGCATACCTTCTACCCAGAGGCTAAACTTCGACTGCTTAGTGCATTATATGCATATCTGTAAGTCAATTCATCACAATTATTCCTTTGTGGGGGTTTTTTTGAGGTTGCTTAAAATGTTGGTTTCATTAAAAAGTGCATACACTGGTTACTCTACTATGTAGTGGCTGAACTATGGTGTGCCTGGTGTAATCAACCTCTGGACCTTTGCACTCCTCCTCACAGTCAACTCTATTAGATCCTTTCGACCTACTGTAGGGGCTTCTCTGTGTCCCAGATGCACATGAAATATCTCTCTTTCATTATCTAAACgggattgatgaggatttttaaagCTGAAGTAGTCTTGCTTATATTAACAATGGTTGTTGCAATCCAGGCATTTGTATGAAAGGTTAGCATCTCTTTATTTCACTTTCTATTACCTAGCTTCTCCTTTCACCTCCTGACCAATCACTAATCGGTCAGGTCACATGTAGTGCTTAAAgaccagggcccggtttcccaaaagcatcttaaggctaaattCATCATTAGAAACTTCTTAAGAGCATGGttaaatctctgagctgtttcccaaaaccaacGTTCTTAACATTGCACTTGAAAATGCTTGAAATCTAACCACTAggtggttagtggttagagtgttggactagtaacagcaaggttgtaagttcaaacccccgagctgacaaggtacaaatctgtcgttctgcccctgaacacacagttaacccactgttcctaggccgtcattgaaaataagaatttgttcttaactgacttgcctagttaaataaaggtaaaatgaacTTGCCTCGGACCACTCGTAGTACATGTGTGTCGTTAGATGCTTTTTTTGCCCTCCTGCGTCACTCTATAATCAGAAAATCTCTGCTTAACATAGAATCAATCACATGGTTATCTGCGCCGAtaaagttgactacaaatacaaagttgccaatgtcttttCAATTGATACAATTTCAAGATGCTTGAAATAAAAACCGAGATGACTGCATTCAAATATAAATACAGTACGCTATACGTCTATTTCAATCACTTTGaaatactatatacagtgccttgcgaaagtattcgccccccttgaac

Function

NR:

description
MAM domain-containing glycosylphosphatidylinositol anchor protein 2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036955189.1 True 5521 mRNA 0.50 17 58382544 58566706

Neighbor

gene id symbol gene type direction distance location
dnaaf2 klhdc1 coding upstream 74370 58300100 ~ 58308174 (+)
LOC110498189 klhdc1 coding upstream 84285 58293310 ~ 58298259 (+)
wdr20a LOC106611292 coding upstream 123152 58251569 ~ 58259392 (+)
LOC118941556 NA coding upstream 136009 58246466 ~ 58246535 (+)
LOC118941559 NA coding upstream 139147 58243326 ~ 58243397 (+)
mis18bp1 mis18bp1 coding downstream 39902 58606103 ~ 58625926 (+)
degs2 degs2 coding downstream 72339 58639045 ~ 58648752 (+)
disp2 disp2 coding downstream 289025 58855731 ~ 58868973 (+)
LOC110498202 LOC106608562 coding downstream 317100 58883806 ~ 58892741 (+)
prlh2r LOC106608506 coding downstream 328546 58895252 ~ 58904165 (+)
G1643374 NA non-coding upstream 13491 58368823 ~ 58369053 (+)
G1643063 lrr1 non-coding upstream 68121 58313760 ~ 58314423 (+)
G1643062 NA non-coding upstream 69580 58312724 ~ 58312964 (+)
G1643056 lrr1 non-coding upstream 71502 58310321 ~ 58311042 (+)
G1643053 lrr1 non-coding upstream 72360 58308700 ~ 58310184 (+)
G1643511 NA non-coding downstream 10862 58577568 ~ 58577814 (+)
G1643516 NA non-coding downstream 32876 58599582 ~ 58605523 (+)
G1643530 NA non-coding downstream 46072 58612778 ~ 58612996 (+)
G1643532 NA non-coding downstream 50413 58617119 ~ 58617324 (+)
G1642993 LOC106611338 other upstream 206059 58164477 ~ 58176485 (+)
G1642565 NA other upstream 699991 57656349 ~ 57682553 (+)
G1642062 NA other upstream 1105767 57275053 ~ 57276777 (+)
G1641935 NA other upstream 1238619 57135826 ~ 57143925 (+)
G1644123 NA other downstream 487817 59054523 ~ 59057223 (+)
G1644280 NA other downstream 629978 59196684 ~ 59197013 (+)
G1644569 NA other downstream 1041894 59608600 ~ 59609394 (+)
G1644651 NA other downstream 1181278 59747984 ~ 59748345 (+)
LOC110498402 LOC106604468 other downstream 1816815 60382983 ~ 60392450 (+)

Expression


Co-expression Network