LOC110498214 (LOC106607310)


Basic Information

Item Value
gene id LOC110498214
gene name LOC106607310
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 59739558 ~ 59760715 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021574841.2
aaattGTCAATTTAGACTACATCTATAAATATGATGGGCCAGTGGTCGCTCAGACCTTCTGGGGGGACTGTGAAACTGTGGATGCCACTGATAGACTTATTTAGAAAAATGTCAAGGACGGAGGTGGACATGACTTTAAAATTGTAACGACATTAACATTTTAAATATGTTCCAAAGACATCGGCAGCTGTTCTAGCGTTAAACAATTGCAGCCATGGTTGCCAATTGGTTGTCAACAGCCTTTTGGCTATTGTAGTCTTTTGACTGTTAACAAACCGGAATCTCTAAAGTTGTCAGAAGTGAGGCATGCAGCATGCAACTAACTGTGCCAGCGCCTGACCTAAAACCAACCCGTGATCTTACCGCATTTGACCACTTCCTGTTTTTTGCTGTTTAACAGGAAACCAGACTTCTAGGAAACCAGTTTAAGCAAAGATTGTCTATTAAATTGACAAGACAGTCAAGTAACCGCTCTAaatatggaaatacatgtcctcagaTGGAAGACAGGCAGGAGaaggcgagatcaggtgggactattctagccaatgagaggacaGATACGTGTGTGAACAGCAGGCCATGGAgatagacactgtatatagacataagaggacatttgaaatatatttaatatattttttacttttgtgagtgtaatgttcatttttgtttgtatttcactgttgtttatcaatttcacttgctttggcaatgtaaacatgtttcccatgcctataaagccccttaaatGGAAAATTGAATTGATAGAGGGCTCATCtttttgtatctgtgccattatagtgtCTGACAATATGGGCAGCGTcattgaggctatctccattttTAAAGAAGTAAATGTTGttcttcttcattggctgattgctcccaaATCATAGGAAACCCCCACCCACTGTACtgctttaaaatggtggaagccctcaatggcaatgtccatgctaaaacagATTATATCCATGACCAGTCCTCTCTCTATGACAACTGGCACAAGatatagtctttttttttttttttaagttgccGAAATGCCACTTGCCTCTACTTATATCAGTGTATTCGTAACAACTCAACCATTACAAAATGTATATTCGATAAAATAAGCCTCACGTAGCAAATTCGCAATACATTTTTCCGTTACCAAATTTGACTGTTACCAAATTCAACACTCTCATTTGACTCCGTACAAAAACTCCTCACTTTGTGCGATTATTTTTGAGGATAGATTTTGGCCGGAGGGAAACCTCTCGcatacctcttcctctctggtttaaAGCTACCTAGTAACCAGACTGCCATTTTCTGTGTCAAATGCAATGGGGTGGTTCCAAGACCAACAGTAAATACACCAAACCTAGGAgcaagatggagaggaagagagaatgtgGTTGTGGCCATAGATCTCCACTGGTCCATCAGGAGAGACCCGGCTCACCTGTACCCAGCTGTGTATCTATGAAGAGTGAAAATTCTATATATCTGCCAATCGACTTCAGTGGTGGAGACTTTACCCATGAACCAAGAACAATTGGTGACCAAGAGCAGAGGTCAGAGTCAGAGATTCCGAGTGATGAACTTCATCTGGTGTACCAACTCAAATCTACCCTGAAGAAGAGACATGAATGCATATTTGAGGGAATAGCTAAACAAGGCCACTCAACACTTCTCAATaagatctacacagagctctacatcacagagggtggaaGCGGAGATGTCAATAACGAACATGAGGTGAGACAGATTGAAACAGCTTCCAGGAAATCAGCAGCACAAGGGACAAAAATCAAATGTAACGACATCTTTAAACCCTCACCTGGACAAGACAAACCTATCAAAACTGTGCTGACAAAGGGAGTTGCTGGCATTGGAAAAACTgtctctgtgcagaagttcattctggactgggctgaaggaaaagcTAATCATGATGTCCAATTCATATTTCCACTTCCTTTtcgggagctgaatttgatgaaaaataaaaaaatctgtttGAATGAACTTATAGATCACTATTTCATTGAGATTAGAGAATCTGGAATCTCCAACTTTGACAGCTACAAAGTTATGTTTGTTcttgatggtctggatgagttTCGACTTCCTCTAGACTTCAAGAACAACAAgagctgctgtgatgtcacagagtcaACCTCCGTGGATGTGCTGCTAACAAACCTCATCAAGGGGAATCTGCTCCCCTCTGCTCTTGTCTGGATAACATCCCGACCAGCAGCAGCCAATCAGATTCCTCCAGAGTGTGTTGATCAGGTGACAGAGGTACAAGGATTCAACGACccacagaaggaggagtactTCAAGAATAGAATCAGTGATGAGAACCTGGCCTGCAGAATCATCACACACATTAAGTcatcaaggagcctccacatcatgtgccacataCCAGTCTTCAGTTGGATTACGGCCACTGTTCTAGAGAGACTGTTGTGTCAGGCAGAGAGTGGAGAGATGCCCAGGAATCAGACTCAAATGTACACACACTTCCTGGTATTTCAGACCAAACAAGGGATTCAGAAGTATCTCGAAGACCATGACCGAGATCCACACTGGGATAAAACGATAATTCTCTCTCTGGGAAAACTGGCCCTCAAACAACTGGAAAAAGGCAATCTGATCTTCTATGAGGAAGACCTAAGGGAGTGTGGCATTGATGTCAGAGAAGCATCAGTGTACTCAGGAGTGTGCACACAGATCTTCAGAGAGGAGTGTGGGCTGTACCAGGAGAATGTGTACTGCTTTGTGCATCTGAGCATCCAGGAGTTTCTTGCTGCTTTATATGTGTTTCTCACATTCAACCAAAGCAGAGAGAATCCACTGGTCAAAAAGAGATCTTCATTCAGGGACCAGGAATCATCAATCGGACACAAATCTACGATCGACTTCTACAACAGTGCAGTAGATAAAGCTTTACAGAGCGAGAATGGACACCTGGATCTGTTCCTCCGCTTTCTTCTGGGCCTTTCACTTGAGTCCAATCAGACTCTCCTACGAGGCCTACTGTCACAAACAGAGAGCAGCTCACTGAcaaatgtggaaacagtcaaaTACATCAACGAGAAGATAAGAGAGAATCCCTCACCAGAGAAATGCATCAATCTGTTCCATTGTCTGAATGAGCTGAATGACCACTATCTAGTGTGGGAGATGCAAAGCTACTTGAACTCAGGAAGTCTCTCAGAAGCCAAATTGTCACTTACAGAGTGGTCAGCTCTGGCctttgtgttgctgacttcagAAGAGGAGCTTGATGTTCTTGACCTAAATAGATTCTCCAGTACAGAGGAATGTCTTCTAAGGCTGCTGCCAGTGGTCAAAGCCTCCAGAACAGCTCTGTTGAATAGATGTAAACTCACAGAGAGATGCTGTAAAGAGTTGGCATCAGCTCTCAGCTCAAACTCCTCACAACTGAGACAACTGGACCTGAGTGACAATGACCTGCAAGATTCGGGAGTGGGGCTGCTGTGTGCCGGACTCGGCAATCCACAGTGTAAACTGGAAACACTGAGGTTGAATAGCTGTAAACTCACAGAGAGATGTTGTGAACAGTTGGCCTCAGTTCTCATCTCAAACTCAAACCTGAGAGAACTGGATCTGAGTGACAATGACCTgcaggattcaggagtgaagctgctctctgccgGACTGGGCAGTCCAAcctgtaaactacagacactgagGTTGAATAGATGTAAACTCACAGAAAGCTGTTGTGAACAGTTGGCCTCAGTTCTCATCTCAAACTCaaacctgagagagctggatctgagtGACAATGACCTGCAGGATTCAGGAGTGGAGCTGCTGTCTGCTGGACTGGGGAGTCTGCAATGTAAACTGGAGACACTGAGGCTGGACCGATGTAACATCACAAAGAAAAACTTGGAAGAATGTTCCTCAACTCTCAGCTCAAACTCATCCCACCTGAGAGAACTGGACCTGAGTTACAGTCAGCCAGGAGACCCAGGAGATCTAGGAGACCCAGGAGATCTAGGAGACCCAGGAGTAGAGTTGCTCACTGCTGTCCTGGAGGATCCTCAATATCATCTCAAAACAGTCAGTGGCCACGGTGAAGAGTTTTTGCTGTTTCAGAGATCCTCAGTAGTTGCATGTGAGCTAACACTGGACCCGAACACAACATacagacatctctctctgtctgaggacaACAGAAAGGTGACATGGGAGATAGAAGAGCAGCTGTATCCTGATCACCCAGACAGATTTATGGACTGGACACAGGTGCTTTGTAGAGAAGGTCTGACTGGGCGCTGCTACTGGGAGGCGGAGTGGAGCGGGGATGTGGTTGATATAGCAGTAACGTATAAAGAAATCAGCAGGAAAGGAGTGGGGAAAGACTGTGGGTTTGGATTTAATGACAAGTCCTGGAGAATGTTGTGCTCTGATCAGAAGTACACTGCCTTGTACAATAATAAGTGTACTTTCATACCGGTCCCTTGCTCCaacagagtaggagtgtatctggactggccggctggcactctgtccttctacagcaTCTCCTCGGACACAGCAACTCTACTGCACACGTTCCAAGCCAAATTCACTAAGCCTCTTTACCCAGGGTTTAGGCTTTGGGTTGGTTCTTCAGTGACCCTGTGCCATGTAGACACCAAAGCCATCAAAGAAACACAGTCATAAGTTTGTCGTGATAAATGTGACGGCCACACATTTGATGTGTTCAGTGAAACAtaataccaattagtggaaaaaatatcagaatttggCTGCCTAACTAAACGCAGCCATTAAAAATCAGTTTACTCATGCAGTTTAAAATTCACTTTGCATAACACACCAAGCTTTAAAAGACGCATGGTTTTAAAATATCCCCAAAATATTTATTAAAAGAGAGAACttacccaagcctccccatttctccttcacccaaatccagatagctgatgttctgaaagagttgcaaaatttggacccctacaaatcagctgggctaaacaatctggaccctctcttacTAAGATTATCTtctgcaa
>XM_021574844.2
GGTCCATCAGGAGAGACCCGGCTCACCTGTACCCAGCTGTGTATCTATGAAGAGTGAAAATTCTATATATCTGCCAATCGACTTCAGTGGTGGAGACTTTACCCATGAACCAAGATGAACTTCATCTGGTGTACCAACTCAAATCTACCCTGAAGAAGAGACATGAATGCATATTTGAGGGAATAGCTAAACAAGGCCACTCAACACTTCTCAATaagatctacacagagctctacatcacagagggtggaaGCGGAGATGTCAATAACGAACATGAGGTGAGACAGATTGAAACAGCTTCCAGGAAATCAGCAGCACAAGGGACAAAAATCAAATGTAACGACATCTTTAAACCCTCACCTGGACAAGACAAACCTATCAAAACTGTGCTGACAAAGGGAGTTGCTGGCATTGGAAAAACTgtctctgtgcagaagttcattctggactgggctgaaggaaaagcTAATCATGATGTCCAATTCATATTTCCACTTCCTTTtcgggagctgaatttgatgaaaaataaaaaaatctgtttGAATGAACTTATAGATCACTATTTCATTGAGATTAGAGAATCTGGAATCTCCAACTTTGACAGCTACAAAGTTATGTTTGTTcttgatggtctggatgagttTCGACTTCCTCTAGACTTCAAGAACAACAAgagctgctgtgatgtcacagagtcaACCTCCGTGGATGTGCTGCTAACAAACCTCATCAAGGGGAATCTGCTCCCCTCTGCTCTTGTCTGGATAACATCCCGACCAGCAGCAGCCAATCAGATTCCTCCAGAGTGTGTTGATCAGGTGACAGAGGTACAAGGATTCAACGACccacagaaggaggagtactTCAAGAATAGAATCAGTGATGAGAACCTGGCCTGCAGAATCATCACACACATTAAGTcatcaaggagcctccacatcatgtgccacataCCAGTCTTCAGTTGGATTACGGCCACTGTTCTAGAGAGACTGTTGTGTCAGGCAGAGAGTGGAGAGATGCCCAGGAATCAGACTCAAATGTACACACACTTCCTGGTATTTCAGACCAAACAAGGGATTCAGAAGTATCTCGAAGACCATGACCGAGATCCACACTGGGATAAAACGATAATTCTCTCTCTGGGAAAACTGGCCCTCAAACAACTGGAAAAAGGCAATCTGATCTTCTATGAGGAAGACCTAAGGGAGTGTGGCATTGATGTCAGAGAAGCATCAGTGTACTCAGGAGTGTGCACACAGATCTTCAGAGAGGAGTGTGGGCTGTACCAGGAGAATGTGTACTGCTTTGTGCATCTGAGCATCCAGGAGTTTCTTGCTGCTTTATATGTGTTTCTCACATTCAACCAAAGCAGAGAGAATCCACTGGTCAAAAAGAGATCTTCATTCAGGGACCAGGAATCATCAATCGGACACAAATCTACGATCGACTTCTACAACAGTGCAGTAGATAAAGCTTTACAGAGCGAGAATGGACACCTGGATCTGTTCCTCCGCTTTCTTCTGGGCCTTTCACTTGAGTCCAATCAGACTCTCCTACGAGGCCTACTGTCACAAACAGAGAGCAGCTCACTGAcaaatgtggaaacagtcaaaTACATCAACGAGAAGATAAGAGAGAATCCCTCACCAGAGAAATGCATCAATCTGTTCCATTGTCTGAATGAGCTGAATGACCACTATCTAGTGTGGGAGATGCAAAGCTACTTGAACTCAGGAAGTCTCTCAGAAGCCAAATTGTCACTTACAGAGTGGTCAGCTCTGGCctttgtgttgctgacttcagAAGAGGAGCTTGATGTTCTTGACCTAAATAGATTCTCCAGTACAGAGGAATGTCTTCTAAGGCTGCTGCCAGTGGTCAAAGCCTCCAGAACAGCTCTGTTGAATAGATGTAAACTCACAGAGAGATGCTGTAAAGAGTTGGCATCAGCTCTCAGCTCAAACTCCTCACAACTGAGACAACTGGACCTGAGTGACAATGACCTGCAAGATTCGGGAGTGGGGCTGCTGTGTGCCGGACTCGGCAATCCACAGTGTAAACTGGAAACACTGAGGTTGAATAGCTGTAAACTCACAGAGAGATGTTGTGAACAGTTGGCCTCAGTTCTCATCTCAAACTCAAACCTGAGAGAACTGGATCTGAGTGACAATGACCTgcaggattcaggagtgaagctgctctctgccgGACTGGGCAGTCCAAcctgtaaactacagacactgagGTTGAATAGATGTAAACTCACAGAAAGCTGTTGTGAACAGTTGGCCTCAGTTCTCATCTCAAACTCaaacctgagagagctggatctgagtGACAATGACCTGCAGGATTCAGGAGTGGAGCTGCTGTCTGCTGGACTGGGGAGTCTGCAATGTAAACTGGAGACACTGAGGCTGGACCGATGTAACATCACAAAGAAAAACTTGGAAGAATGTTCCTCAACTCTCAGCTCAAACTCATCCCACCTGAGAGAACTGGACCTGAGTTACAGTCAGCCAGGAGACCCAGGAGATCTAGGAGACCCAGGAGATCTAGGAGACCCAGGAGTAGAGTTGCTCACTGCTGTCCTGGAGGATCCTCAATATCATCTCAAAACAGTCAGTGGCCACGGTGAAGAGTTTTTGCTGTTTCAGAGATCCTCAGTAGTTGCATGTGAGCTAACACTGGACCCGAACACAACATacagacatctctctctgtctgaggacaACAGAAAGGTGACATGGGAGATAGAAGAGCAGCTGTATCCTGATCACCCAGACAGATTTATGGACTGGACACAGGTGCTTTGTAGAGAAGGTCTGACTGGGCGCTGCTACTGGGAGGCGGAGTGGAGCGGGGATGTGGTTGATATAGCAGTAACGTATAAAGAAATCAGCAGGAAAGGAGTGGGGAAAGACTGTGGGTTTGGATTTAATGACAAGTCCTGGAGAATGTTGTGCTCTGATCAGAAGTACACTGCCTTGTACAATAATAAGTGTACTTTCATACCGGTCCCTTGCTCCaacagagtaggagtgtatctggactggccggctggcactctgtccttctacagcaTCTCCTCGGACACAGCAACTCTACTGCACACGTTCCAAGCCAAATTCACTAAGCCTCTTTACCCAGGGTTTAGGCTTTGGGTTGGTTCTTCAGTGACCCTGTGCCATGTAGACACCAAAGCCATCAAAGAAACACAGTCATAAGTTTGTCGTGATAAATGTGACGGCCACACATTTGATGTGTTCAGTGAAACAtaataccaattagtggaaaaaatatcagaatttggCTGCCTAACTAAACGCAGCCATTAAAAATCAGTTTACTCATGCAGTTTAAAATTCACTTTGCATAACACACCAAGCTTTAAAAGACGCATGGTTTTAAAATATCCCCAAAATATTTATTAAAAGAGAGAACttacccaagcctccccatttctccttcacccaaatccagatagctgatgttctgaaagagttgcaaaatttggacccctacaaatcagctgggctaaacaatctggaccctctcttacTAAGATTATCTtctgcaa

Function

NR:

description
NACHT, LRR and PYD domains-containing protein 12-like isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021574841.2 False 5057 mRNA 0.44 11 59739558 59760715
XM_021574844.2 True 3583 mRNA 0.45 8 59744224 59760715

Neighbor

gene id symbol gene type direction distance location
rdh14a LOC106607934 coding upstream 251164 59482942 ~ 59488394 (+)
LOC110498210 osr1 coding upstream 512040 59220036 ~ 59227518 (+)
LOC110498208 LOC106608166 coding upstream 717239 59015463 ~ 59022319 (+)
prlh2r LOC106608506 coding upstream 835393 58895252 ~ 58904165 (+)
LOC110498202 LOC106608562 coding upstream 846817 58883806 ~ 58892741 (+)
LOC110498234 LOC106607246 coding downstream 13253 59773968 ~ 59799587 (+)
ankef1b LOC106609265 coding downstream 53886 59814601 ~ 59839856 (+)
LOC110510484 LOC106607199 coding downstream 104877 59865592 ~ 59961717 (+)
LOC110498222 LOC106603387 coding downstream 235810 59996525 ~ 60022616 (+)
LOC110498212 rp1l1 coding downstream 550744 60311459 ~ 60330337 (+)
G1644643 NA non-coding upstream 8319 59730256 ~ 59731239 (+)
G1644641 NA non-coding upstream 10296 59727628 ~ 59729262 (+)
G1644635 LOC106607662 non-coding upstream 34886 59698919 ~ 59704672 (+)
G1644572 NA non-coding upstream 53209 59684568 ~ 59686349 (+)
G1644610 NA non-coding upstream 73389 59665764 ~ 59666169 (+)
G1644645 NA non-coding downstream 594 59761309 ~ 59762643 (+)
G1644921 NA non-coding downstream 52907 59813622 ~ 59813834 (+)
G1644944 NA non-coding downstream 84646 59845361 ~ 59845842 (+)
G1644954 NA non-coding downstream 89643 59850358 ~ 59850594 (+)
G1644958 NA non-coding downstream 92913 59853628 ~ 59853860 (+)
G1644569 NA other upstream 130164 59608600 ~ 59609394 (+)
G1644280 NA other upstream 542545 59196684 ~ 59197013 (+)
G1644123 NA other upstream 682335 59054523 ~ 59057223 (+)
LOC110498189 klhdc1 other upstream 1441323 58293310 ~ 58298259 (+)
G1642993 LOC106611338 other upstream 1563073 58164477 ~ 58176485 (+)
LOC110498402 LOC106604468 other downstream 622806 60382983 ~ 60392450 (+)
plaat1l LOC106611413 other downstream 638192 60398860 ~ 60402461 (+)
chrna2a LOC103467111 other downstream 712408 60462967 ~ 60475546 (+)
LOC110498236 LOC106603790 other downstream 781321 60541955 ~ 60546243 (+)
G1645443 NA other downstream 955218 60715933 ~ 60718611 (+)

Expression


Co-expression Network