XLOC_003516 (si:ch211-226m7.4)


Basic Information

Item Value
gene id XLOC_003516
gene name si:ch211-226m7.4
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 28620683 ~ 28631342 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00006889
gatagatagatagatagatagatagatagatagatagatagatagatagatatgactGACTTAATCTTGTAGGGACATCAAGGCCCTTTATAGTTATAATGAGCTGGTTGATTTGGTTCATGGATTATAACACGTAAAGACCTTTACTTTTGTAATCACTTTGGaaaaaattaatagaaaaataaCATCGGGAACCAAGCCTGTTAAACATTAAGCAATGCTCTGCTGCAATCTacagtaaaacttttttttattttttattccttttaagAATCATTTACATTCAGCAGTATTTAGTATTTGATTTACCAGGGATTGTGATTTCAACTGTTTTTGATTGACTTTATAAGTTCCAAACTCTTTTTGTTAAGTCCAAACAATGCTTAATTTGTCCGTTGAATCATGAATGATATTTCAGAGTGCGATACATTAAAAATTCCTTCCACATCTCATGTCCTTTGTACAGCCTCATTTGTATGAGACTGCAGTCTTTCCTTTGGTGCTACAAGTAAAGCTAATTATCATCATTCAGAGTGTAGTCAGCATTTGCATGGTGCGTTTAAAGGAATCTGATGAAACTTCTCTTGCTGCAGCTGCTCCCATTGCGCCAGCACTAGTGTTTGTTGTGTCCATGGCAACAGAACTCTAGAATGTCTCCTGCTTTGATGGCTATAGAGAGCCGGTGATCTATATCATAAGTGAGTATCTGATCCTGCTGGAGGTCTGCAGACTGTGAGGAGTTTGAACTATAACAATACAGCATGTATAAAATGCAAAACCCTTATGACAAGTGGAGCCAGCCTGGTTGGAAAATAGAGCAGAAGTATGGCAACAAAGTGCTCATTGGTAATTGGGTGGAGGAGAAATTACAATTCGCTCGAGAGTGTAAGACAGCAAACAGCTCCAACAGGCTGGACTACATACCGCACATGTTGCACAGGCCTGATGTTGTCATGCGGCGAAAGGCTCTTCGCAGATCAGAGGGCGTTCCCTCAAGGCAGTTACTTTCTCATCATGATGTCCCGTCCTCCCACTACCTGGTGTCCCTGTATGATGAGTCTTACGGGCGTCAGACCTCCTCCTCTCTGCCCACACTGCGCTCCTGGCACCATGACAAACTGGCCTGGGTCCCAGAGAGGTCAGACCACCCAGTCCAAGGCCCCCCTACTAAGTTTGGCTTGGCTGAGTGTTGGCGCACTCGTGTGGAACAACAGCGGGCAGTTGTGCCTACATTAAGCTTGTATAAGGCTTCGTACCCTCTGCACCCCATCAGCTCCTTCTGTCATTCCCGCCACGTCAGCATGCCCAAGCGCTTCTCCAGCAGTCAGCACCCTGCCAACCACAGCAGGCAGGAGTTGGCACTGAAACCCAGACCCTGCAGGCAGGTCTCCAGTAATCCAGCCAGCCCGCTGTGACCCTTAGCCTTTGTCTCAGCGCCTTCAACCCTGCAGTGCCACCCTAGTCTCAGTCTGGAGAGAGGGCTTCAATTTCTTGCTTTATTGATCAATATGGCACTTAAAAATGGGAGCATTTTGATGTGTTTGAGGATAGACAATAAAAaagacatactgtactgtactgtactgtggTAGGATTTAACTGTTTGATGACAGTGCTTTAGATGTTTAGCAtttaatgtttgtaaatgtatgaaagttcattcaatcattttattttcagcttattccctttatccCTTCCACTgtgaaacaaccatacactccagc

Function

symbol description
si:ch211-226m7.4 Orthologous to human C1orf158 (chromosome 1 open reading frame 158).

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-080919-1 Orthologous to human C1orf158 (chromosome 1 open reading frame 158).

Ensembl:

ensembl_id ENSDARG00000032885

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00006889 True 1727 mRNA 0.43 4 28620683 28631342

Neighbor

gene id symbol gene type direction distance location
XLOC_003515 aadacl4 coding upstream 872 28617564 ~ 28619811 (+)
XLOC_003514 NA coding upstream 3724 28533224 ~ 28616959 (+)
XLOC_003513 BX649345.2 coding upstream 99919 28517562 ~ 28520764 (+)
XLOC_003512 lrrc38b coding upstream 105705 28476298 ~ 28514978 (+)
XLOC_003511 CR450786.1 coding upstream 173250 28442373 ~ 28447433 (+)
XLOC_003517 NA coding downstream 6120 28637462 ~ 28643700 (+)
XLOC_003518 NA coding downstream 31562 28662904 ~ 28663396 (+)
XLOC_003519 NA coding downstream 165925 28797267 ~ 28836699 (+)
XLOC_003520 NA coding downstream 576544 29207886 ~ 29208193 (+)
XLOC_003521 CR450796.1 coding downstream 720759 29352101 ~ 29352221 (+)
XLOC_003369 CR854846.2 misc upstream 12497601 16122786 ~ 16123082 (+)
XLOC_003318 CR450764.6 misc upstream 15908687 12711700 ~ 12711996 (+)
XLOC_003317 CR450764.16 misc upstream 15926420 12693967 ~ 12694263 (+)
XLOC_003316 CR450764.11 misc upstream 15935084 12685304 ~ 12685599 (+)
XLOC_003315 CR450764.18 misc upstream 15940655 12679732 ~ 12680028 (+)
XLOC_003507 BX601648.2 non-coding upstream 876401 27738489 ~ 27744282 (+)
XLOC_003506 NA non-coding upstream 889508 27729240 ~ 27731175 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000306_04863197_04868703 NA coding CI01000306 null 4863197 ~ 4868794 (+)