G1582117


Basic Information

Item Value
gene id G1582117
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 891087 ~ 998973 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1810947
GTCTACCTCTTCTCTACTTTAAGGCCAAATATCTCTGACAGAGAGCAGTGAATATTTGCCCGTAGTCTGCCTCCTGTCCCTCCTTTCACCATGGGAACACCTTCCTGAAAACAATACAACTATGCTTTGCTTATTAAACCTGTTCTGCCTGTTCATGTCCAAAAAGATTGGAATGTTCCAATGTGCCAAACAGGTGAAAAGGTCACACATGCATCATCCAGGGTTGACATGACCACATTTCTGGTTGGTCCATAACTTTTTTCCTGCTTGTAACAGGGTGTGTTTTTTCTTTCTTGTTTCTGGTAGATGAGCTCTAATATTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1810947 True 322 lncRNA 0.42 2 891087 998973

Neighbor

gene id symbol gene type direction distance location
LOC110515399 LOC106602215 coding upstream 21478 868005 ~ 869609 (+)
LOC110514371 LOC106602218 coding upstream 32946 850675 ~ 858141 (+)
LOC110534574 LOC106602215 coding upstream 68533 820911 ~ 822554 (+)
trnal-cag-27 NA coding upstream 93995 795780 ~ 797202 (+)
LOC110518435 LOC106602206 coding upstream 96716 783571 ~ 794371 (+)
LOC110510679 NA coding downstream 7843 1006816 ~ 1009333 (+)
LOC118936295 LOC106610443 coding downstream 99910 1098883 ~ 1117505 (+)
LOC118941388 LOC106610446 coding downstream 164360 1163333 ~ 1166048 (+)
LOC110497265 LOC106610443 coding downstream 170468 1169441 ~ 1190154 (+)
LOC118941389 LOC106597675 coding downstream 203560 1202533 ~ 1204035 (+)
G1582102 NA non-coding upstream 48105 842263 ~ 842982 (+)
G1582101 NA non-coding upstream 48954 840785 ~ 842133 (+)
G1582038 NA non-coding upstream 199453 691415 ~ 691634 (+)
G1582023 NA non-coding upstream 220512 670307 ~ 670575 (+)
G1582157 NA non-coding downstream 22088 1021061 ~ 1021393 (+)
G1582171 NA non-coding downstream 49155 1048128 ~ 1048635 (+)
G1582174 LOC106610441 non-coding downstream 56825 1055798 ~ 1056944 (+)
G1582177 NA non-coding downstream 64656 1063629 ~ 1063840 (+)
G1582180 NA non-coding downstream 67841 1066814 ~ 1067157 (+)
LOC110516050 nar5 other upstream 839896 48513 ~ 51819 (+)
LOC110510959 LOC106602231 other downstream 562532 1400041 ~ 1564792 (+)
LOC118941396 LOC106602234 other downstream 583118 1580873 ~ 1620973 (+)
G1583003 NA other downstream 1199955 2198928 ~ 2200873 (+)
LOC110518136 LOC106592283 other downstream 1798130 2770293 ~ 2811692 (+)
G1583215 NA other downstream 1814901 2765199 ~ 2815294 (+)

Expression


Co-expression Network