G1582180


Basic Information

Item Value
gene id G1582180
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 1066814 ~ 1067157 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1811014
gcaTTATGCTTTGGTCTTGATCTTTACTGATGAGTGAGCTGCCTGTAATGGTTATCATGCACCAATAGCAATCTCTCATTAGCCTGCATTTCTTGAATGATAGACAAACCATCCAATAGAGAGGCAATAGAGAACCACAATTAttttccagccattacaatgagcttgtcctcctatagctcctcccaccagcctccactgacagaAAACTAACCATACAGACACAGAACAGTGTGAATGTGATGAGCCATGGAATATCTGTGCAGCTTTGCTCCTTCAATGGTTTCCACTCGTGTTGCTTTGGATAACAATAAAGGTAGAAACCAATAAATGAACacctgtcc

Function

NR:

description
PREDICTED: choline transporter-like protein 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1811014 True 344 lncRNA 0.42 1 1066814 1067157

Neighbor

gene id symbol gene type direction distance location
LOC110510679 NA coding upstream 57481 1006816 ~ 1009333 (+)
LOC110534577 LOC106602215 coding upstream 106437 949226 ~ 960377 (+)
LOC110515221 LOC106602215 coding upstream 139611 918885 ~ 927203 (+)
LOC110518152 NA coding upstream 165762 898552 ~ 901052 (+)
LOC110515399 LOC106602215 coding upstream 197205 868005 ~ 869609 (+)
LOC118936295 LOC106610443 coding downstream 31726 1098883 ~ 1117505 (+)
LOC118941388 LOC106610446 coding downstream 96176 1163333 ~ 1166048 (+)
LOC110497265 LOC106610443 coding downstream 102284 1169441 ~ 1190154 (+)
LOC118941389 LOC106597675 coding downstream 135376 1202533 ~ 1204035 (+)
LOC110534781 LOC106610446 coding downstream 177713 1244870 ~ 1247840 (+)
G1582177 NA non-coding upstream 2974 1063629 ~ 1063840 (+)
G1582174 LOC106610441 non-coding upstream 9870 1055798 ~ 1056944 (+)
G1582171 NA non-coding upstream 18179 1048128 ~ 1048635 (+)
G1582157 NA non-coding upstream 45421 1021061 ~ 1021393 (+)
G1582117 NA non-coding upstream 67841 891087 ~ 998973 (+)
G1582192 NA non-coding downstream 4887 1072044 ~ 1072265 (+)
G1582193 NA non-coding downstream 6186 1073343 ~ 1073576 (+)
G1582220 NA non-coding downstream 52674 1119831 ~ 1120703 (+)
G1582222 NA non-coding downstream 107248 1174405 ~ 1212762 (+)
G1582260 LOC106610447 non-coding downstream 161733 1228890 ~ 1261384 (+)
G1582090 LOC106602215 other upstream 108368 810245 ~ 958446 (+)
LOC110516050 nar5 other upstream 1015623 48513 ~ 51819 (+)
LOC110510959 LOC106602231 other downstream 494348 1400041 ~ 1564792 (+)
LOC118941396 LOC106602234 other downstream 514934 1580873 ~ 1620973 (+)
G1583003 NA other downstream 1131771 2198928 ~ 2200873 (+)
LOC110518136 LOC106592283 other downstream 1729946 2770293 ~ 2811692 (+)
G1583215 NA other downstream 1746717 2765199 ~ 2815294 (+)

Expression


Co-expression Network