G1582939


Basic Information

Item Value
gene id G1582939
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 1885281 ~ 1887593 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1811952
ctGCTTTTAAGACTGGGGCTTCTGGTCACCccagattttattttttacctttatatatctaggcaagtcagttaagaacaaattcttatttacaatgacggcctaccccggccaaacccggacgacgctgggacaactGTGTGCcgtccaatcacggccggatgtgatacagccacTAGGGAGCCAGAGTTACAGTATAAAAGTTATATTCAGAGAGGATCAATCGGATAGTTGTTTCACAGTCTCTACCCTTCACCCCCCAAATCACAGTGTCAAAACTGACCcacaaaacataaacaaacacaaaaaaaaatacaaatgtccaTGAACTTTTGTCGAGATTTAGAAAGTTGGACTAGAAGACAGCCTGTTAAGgtgtgtttccattcaaatgtcTTGTGTTGATAACAACTGGACGTAGTGAGGTCACACCTACAACAACACATTTTGCGTGAGAATGGACTAATAGTTGCCATATTTTAATCATTCTCATGTGCCTAGTTGTTGCCACGGTGAAACGTCCACTCCTGTAGATCTGtaataattggatggtgaaacttgcaTTCAGCCAATCAGAAAAGCAAAGCGAGGGCAAttcaggcattcttgaaagtcaAGACAATCCCTTTCCCTGCAAATGAACTTAAAAAACGTTGTCGTTTTAAAAAATAGATTTAGCAAGCAGTAGGCATTTAGAATGAACCGTAGGGTATGAACTGCTTTATAGTTGTGTGATGACATCACGTGCCCCGTGTGTACCTTTTATAAGTTATTCGGCAATCATCgttgatttgaaaaaaaaaaaacacagtttcgATCATTTGTCGCAATGAAGAAAGTCAGACAAAATAAAACTCCACCCCTTGTGGAAAATGAAAAGTCGTTCATTGGAACGTCTCTCCCAGAGCTGCCGTTGGTCTTCGCCACATTGCTTTTGTGTAACTAGCCCGGGTCACTGGAAACTGCCGAGTGTCTGGCCATTTTTTTTACCAGCAACACAATGCTTTATGATGTCATAATGGGTGttctttctgttgttgttgttgttgttgttgcatgttTTTCGACCATCCTCCCGTCTCCAAAATCCTTCGAGTCCTCAGCAGAAACACAAAATGTCCGCCCGACCAAACAAAACCCTTTGCCTCAACATggcccctcagcagcctcctgtgatgctCACCCACTCATCCACCCATGGcccctcagcagcctcctgtgatgctCACCCACTCATCCACCCATggcccctcagcagcctcctgtgatgctCACCCACTCATCCACCCCTACCTTGAAGAAGAGGACACAGACAAGCTGTGGGAACATGATTGTGTATGACATGTCGACGCCCACCAGCCAGAAAACCAGGACACTGTTATCCAGGAAGGTCAGGGCCGTCCCCGCCAGGCCACACACCACCACCGAGGTACGGATCACCCACTGCATCTCCCTGTCTGAG

Function

NR:

description
high affinity choline transporter 1-like

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU1811952 True 1462 lncRNA 0.45 2 1885281 1887593

Neighbor

gene id symbol gene type direction distance location
LOC110497256 NA coding upstream 8965 1875632 ~ 1876316 (+)
LOC118941531 LOC105006014 coding upstream 35945 1830544 ~ 1849336 (+)
trnaq-cug-118 NA coding upstream 65309 1819901 ~ 1819972 (+)
trnae-cuc-281 NA coding upstream 169192 1716018 ~ 1716089 (+)
trnae-cuc-280 NA coding upstream 169373 1715837 ~ 1715908 (+)
LOC118941409 NA coding downstream 266978 1942489 ~ 2163262 (+)
LOC118941408 NA coding downstream 849493 2737086 ~ 2770154 (+)
LOC110518136 LOC106592283 coding downstream 882700 2770293 ~ 2811692 (+)
LOC118941397 LOC106601386 coding downstream 1001370 2888963 ~ 3003056 (+)
LOC118941401 LOC106609853 coding downstream 1019224 2906817 ~ 2909482 (+)
G1582937 NA non-coding upstream 4889 1879093 ~ 1880392 (+)
G1582936 NA non-coding upstream 9976 1874110 ~ 1875305 (+)
G1582931 NA non-coding upstream 24327 1860608 ~ 1860954 (+)
G1582897 NA non-coding upstream 54816 1830108 ~ 1830465 (+)
G1582838 NA non-coding upstream 71626 1804852 ~ 1813655 (+)
G1582944 NA non-coding downstream 12889 1900482 ~ 1900747 (+)
G1582950 NA non-coding downstream 25558 1913151 ~ 1926320 (+)
G1582952 NA non-coding downstream 27622 1915215 ~ 1920083 (+)
G1582984 NA non-coding downstream 56816 1944409 ~ 2463411 (+)
LOC118941396 LOC106602234 other upstream 283548 1580873 ~ 1620973 (+)
LOC110510959 LOC106602231 other upstream 320612 1400041 ~ 1564792 (+)
G1582090 LOC106602215 other upstream 926835 810245 ~ 958446 (+)
LOC110516050 nar5 other upstream 1834090 48513 ~ 51819 (+)
G1583003 NA other downstream 311335 2198928 ~ 2200873 (+)
G1583215 NA other downstream 926281 2765199 ~ 2815294 (+)
LOC110517772 LOC106610548 other downstream 1144926 3032473 ~ 3091701 (+)

Expression


Co-expression Network