G1582950


Basic Information

Item Value
gene id G1582950
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 1913151 ~ 1926320 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1811965
TGATGATTCCGACCAGTATATTGGGCATGGTCTCTACAAGCCCCAATCTGATTGGCTGCTTACCAGTCAGAGTGAAGATCCCCACCAACAGGTTGATGTTGCGTCCGGCGAGCAGCGTGATCTCCATCCCGTCCGACCCGGTACACTTCCTCTCCACCTTCTTGGAGCGCATcgaggcccagatccccgtgccTAGGATCAGCAAGTAGAAGATCGCCATGACGATCAGGCCCGGAACGTTCAGAGACATTTTAACCTtgttctccttcctcttctcacCGAAGCAAATTATTgttcaactagagagagagagagagagagagagagagCTAAATGAATAACAGATAACGTCCCAAATAGTGTTGcaggtctgtcagtctgtctgtcagttcaGTCTGTTCAGGGTATTCACATAAACATGGGGAGTCTCTCcaagtcactctctctctctttctggatgGACGGATGGATAGACAAATGGACGGATGAAGGAGGATTTAAAGACCAACAGAGTGGTGACAGACAGACCTCTGtcacagaggaagagaagaacagaacagcaacaggtgtagtaggTCTGTCTAGGTGTTAAAGTGAGGAGGGGGTCTGGAGCTGTGAGGCAGGAAAGAACACTCTAGAATGATTGGGTTCTCCCTCCTGCCGTTATAAACtccagg

Function

NR:

description
PREDICTED: high affinity choline transporter 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1811965 True 677 lncRNA 0.49 2 1913151 1926320

Neighbor

gene id symbol gene type direction distance location
LOC110497256 NA coding upstream 36835 1875632 ~ 1876316 (+)
LOC118941531 LOC105006014 coding upstream 63815 1830544 ~ 1849336 (+)
trnaq-cug-118 NA coding upstream 93179 1819901 ~ 1819972 (+)
trnae-cuc-281 NA coding upstream 197062 1716018 ~ 1716089 (+)
trnae-cuc-280 NA coding upstream 197243 1715837 ~ 1715908 (+)
LOC118941409 NA coding downstream 228251 1942489 ~ 2163262 (+)
LOC118941408 NA coding downstream 810766 2737086 ~ 2770154 (+)
LOC110518136 LOC106592283 coding downstream 843973 2770293 ~ 2811692 (+)
LOC118941397 LOC106601386 coding downstream 962643 2888963 ~ 3003056 (+)
LOC118941401 LOC106609853 coding downstream 980497 2906817 ~ 2909482 (+)
G1582944 NA non-coding upstream 12404 1900482 ~ 1900747 (+)
G1582939 NA non-coding upstream 25558 1885281 ~ 1887593 (+)
G1582937 NA non-coding upstream 32759 1879093 ~ 1880392 (+)
G1582936 NA non-coding upstream 37846 1874110 ~ 1875305 (+)
G1582931 NA non-coding upstream 52197 1860608 ~ 1860954 (+)
G1582984 NA non-coding downstream 18089 1944409 ~ 2463411 (+)
G1582990 NA non-coding downstream 38176 1964496 ~ 1988413 (+)
G1583006 LOC106566139 non-coding downstream 82972 2009292 ~ 2197896 (+)
G1583008 LOC106592562 non-coding downstream 86344 2012664 ~ 2205600 (+)
LOC118941396 LOC106602234 other upstream 311418 1580873 ~ 1620973 (+)
LOC110510959 LOC106602231 other upstream 348482 1400041 ~ 1564792 (+)
G1582090 LOC106602215 other upstream 954705 810245 ~ 958446 (+)
LOC110516050 nar5 other upstream 1861960 48513 ~ 51819 (+)
G1583003 NA other downstream 272608 2198928 ~ 2200873 (+)
G1583215 NA other downstream 887554 2765199 ~ 2815294 (+)
LOC110517772 LOC106610548 other downstream 1106199 3032473 ~ 3091701 (+)

Expression


Co-expression Network