G1583072


Basic Information

Item Value
gene id G1583072
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 2170499 ~ 2521257 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1812158
actgattggacttcacctccactctcccagagcagagaccagctccacccacaagccgcacagactctggagaaaaagaAACTCCAGATTCAGCTACAGGATTCCCACAGTCCAGCTCTCTACACACAACCTTGGCCTCTTTCATTCTCCACCACCCAGGACATAGACCTGACCACTCTCCTTCATTGAAGACTTCCACTGTCCCAGAACAGGAAGTGGTCCCATTCACCAGTCTGACTGAGAGTTCAGCtg

Function

NR:

description
PREDICTED: scavenger receptor cysteine-rich type 1 protein M130-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1812158 True 252 lncRNA 0.52 3 2170499 2521257

Neighbor

gene id symbol gene type direction distance location
LOC118941409 NA coding upstream 7237 1942489 ~ 2163262 (+)
LOC110497256 NA coding upstream 294183 1875632 ~ 1876316 (+)
LOC118941531 LOC105006014 coding upstream 321163 1830544 ~ 1849336 (+)
trnaq-cug-118 NA coding upstream 350527 1819901 ~ 1819972 (+)
trnae-cuc-281 NA coding upstream 454410 1716018 ~ 1716089 (+)
LOC118941408 NA coding downstream 215829 2737086 ~ 2770154 (+)
LOC110518136 LOC106592283 coding downstream 249036 2770293 ~ 2811692 (+)
LOC118941397 LOC106601386 coding downstream 367706 2888963 ~ 3003056 (+)
LOC118941401 LOC106609853 coding downstream 385560 2906817 ~ 2909482 (+)
LOC118941407 LOC106591540 coding downstream 478565 2951647 ~ 3001920 (+)
G1583056 NA non-coding upstream 46571 2123351 ~ 2123928 (+)
G1583022 NA non-coding upstream 111690 2056276 ~ 2058809 (+)
G1582990 NA non-coding upstream 182086 1964496 ~ 1988413 (+)
G1582950 NA non-coding upstream 244179 1913151 ~ 1926320 (+)
G1583174 NA non-coding downstream 30899 2552156 ~ 2632600 (+)
G1583182 NA non-coding downstream 91623 2612880 ~ 2885152 (+)
G1583188 NA non-coding downstream 103119 2624376 ~ 2624688 (+)
G1583190 NA non-coding downstream 110491 2631748 ~ 2633646 (+)
G1583191 NA non-coding downstream 110831 2632088 ~ 2634022 (+)
LOC118941396 LOC106602234 other upstream 568766 1580873 ~ 1620973 (+)
LOC110510959 LOC106602231 other upstream 605830 1400041 ~ 1564792 (+)
G1582090 LOC106602215 other upstream 1212053 810245 ~ 958446 (+)
LOC110516050 nar5 other upstream 2119308 48513 ~ 51819 (+)
G1583215 NA other downstream 292617 2765199 ~ 2815294 (+)
LOC110517772 LOC106610548 other downstream 511262 3032473 ~ 3091701 (+)
LOC110534752 LOC106602173 other downstream 911459 3416203 ~ 3445744 (+)

Expression


Co-expression Network