G1583077


Basic Information

Item Value
gene id G1583077
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 2185572 ~ 2297565 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1812165
CAAAAGGTAGGAATGAAATTGtgttgcagagagttgagttatgtactagactggtgggggtcagggagagagttgagttatgtactagactggtgggggtcagggagagagttgagttatgtactagactggtgggagtcagggagagagttgagttatgtactagactggtgggggtcagggagagagttgagttatgtactagactggtgg
>TU1812166
tatgtactagactggtgggggtcagggagagagttgagttatgtactagactggtgggagtcagggagagagttgagttatgtactagactggtgggagtcagggagagagttgagttatgtactagactggtgggagtcagggagagagttgagttatgtactagactggtgggggtcagggagagagttgagttatgtactagactggtgg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1812165 False 213 lncRNA 0.48 3 2185572 2297214
TU1812166 True 213 lncRNA 0.49 3 2295183 2297565

Neighbor

gene id symbol gene type direction distance location
LOC118941409 NA coding upstream 22310 1942489 ~ 2163262 (+)
LOC110497256 NA coding upstream 309256 1875632 ~ 1876316 (+)
LOC118941531 LOC105006014 coding upstream 336236 1830544 ~ 1849336 (+)
trnaq-cug-118 NA coding upstream 365600 1819901 ~ 1819972 (+)
trnae-cuc-281 NA coding upstream 469483 1716018 ~ 1716089 (+)
LOC118941408 NA coding downstream 439521 2737086 ~ 2770154 (+)
LOC110518136 LOC106592283 coding downstream 472728 2770293 ~ 2811692 (+)
LOC118941397 LOC106601386 coding downstream 591398 2888963 ~ 3003056 (+)
LOC118941401 LOC106609853 coding downstream 609252 2906817 ~ 2909482 (+)
LOC118941407 LOC106591540 coding downstream 702257 2951647 ~ 3001920 (+)
G1583056 NA non-coding upstream 61644 2123351 ~ 2123928 (+)
G1583022 NA non-coding upstream 126763 2056276 ~ 2058809 (+)
G1582990 NA non-coding upstream 197159 1964496 ~ 1988413 (+)
G1582950 NA non-coding upstream 259252 1913151 ~ 1926320 (+)
G1583037 NA non-coding downstream 10474 2308039 ~ 2458876 (+)
G1583114 NA non-coding downstream 20532 2318097 ~ 2680206 (+)
G1583118 NA non-coding downstream 36095 2333660 ~ 2334105 (+)
G1583120 NA non-coding downstream 54080 2351645 ~ 2704430 (+)
G1583005 LOC106592562 non-coding downstream 104364 2401929 ~ 2619707 (+)
LOC118941396 LOC106602234 other upstream 583839 1580873 ~ 1620973 (+)
LOC110510959 LOC106602231 other upstream 620903 1400041 ~ 1564792 (+)
G1582090 LOC106602215 other upstream 1227126 810245 ~ 958446 (+)
LOC110516050 nar5 other upstream 2134381 48513 ~ 51819 (+)
G1583215 NA other downstream 516309 2765199 ~ 2815294 (+)
LOC110517772 LOC106610548 other downstream 734954 3032473 ~ 3091701 (+)
LOC110534752 LOC106602173 other downstream 1135151 3416203 ~ 3445744 (+)

Expression


Co-expression Network