G1583087 (LOC106601384)


Basic Information

Item Value
gene id G1583087
gene name LOC106601384
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 2225573 ~ 2251418 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1812178
ggtgagggagaggagctcaCTCTCAGAGGAGAAGTTATGAGAGAAAACATAATTGTCATAAACACAGCTGTAGttcccttggtgggagtcatctgcagcagggaagaggaaggcagcagAGTGATTGACAGCTAGCTGGGTCTGGGTTCTGGTGGAGCCGGTGAACGTGAGGAGGAAGGAGCCTCCTGGGTACTGTGGCTGAGTGGAGCAGGTGATGGTGAAGCTGTAGCCCCTGAACACCTCGGGCCCCTGGTGGCCCCTGGAGACCCCTCCCATTGAGTCAGTCAGGAAGATGTCAGGCTGGACCAGGAGATCTG

Function

NR:

description
PREDICTED: deleted in malignant brain tumors 1 protein-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1812178 True 317 lncRNA 0.56 2 2225573 2251418

Neighbor

gene id symbol gene type direction distance location
LOC118941409 NA coding upstream 62311 1942489 ~ 2163262 (+)
LOC110497256 NA coding upstream 349257 1875632 ~ 1876316 (+)
LOC118941531 LOC105006014 coding upstream 376237 1830544 ~ 1849336 (+)
trnaq-cug-118 NA coding upstream 405601 1819901 ~ 1819972 (+)
trnae-cuc-281 NA coding upstream 509484 1716018 ~ 1716089 (+)
LOC118941408 NA coding downstream 485668 2737086 ~ 2770154 (+)
LOC110518136 LOC106592283 coding downstream 518875 2770293 ~ 2811692 (+)
LOC118941397 LOC106601386 coding downstream 637545 2888963 ~ 3003056 (+)
LOC118941401 LOC106609853 coding downstream 655399 2906817 ~ 2909482 (+)
LOC118941407 LOC106591540 coding downstream 748404 2951647 ~ 3001920 (+)
G1583086 NA non-coding upstream 344 2224165 ~ 2225229 (+)
G1583036 NA non-coding upstream 3309 2221479 ~ 2222264 (+)
G1583083 NA non-coding upstream 6706 2217998 ~ 2218867 (+)
G1583081 NA non-coding upstream 13992 2211096 ~ 2211581 (+)
G1583008 LOC106592562 non-coding upstream 19973 2012664 ~ 2205600 (+)
G1583101 LOC106594044 non-coding downstream 825 2252243 ~ 2279420 (+)
G1583103 NA non-coding downstream 7432 2258850 ~ 2524584 (+)
G1583106 NA non-coding downstream 17090 2268508 ~ 2271352 (+)
G1583025 NA non-coding downstream 37468 2288886 ~ 2639348 (+)
G1583105 NA non-coding downstream 41367 2292785 ~ 2293202 (+)
G1583003 NA other upstream 24700 2198928 ~ 2200873 (+)
LOC118941396 LOC106602234 other upstream 623840 1580873 ~ 1620973 (+)
LOC110510959 LOC106602231 other upstream 660904 1400041 ~ 1564792 (+)
G1582090 LOC106602215 other upstream 1267127 810245 ~ 958446 (+)
LOC110516050 nar5 other upstream 2174382 48513 ~ 51819 (+)
G1583215 NA other downstream 562456 2765199 ~ 2815294 (+)
LOC110517772 LOC106610548 other downstream 781101 3032473 ~ 3091701 (+)
LOC110534752 LOC106602173 other downstream 1181298 3416203 ~ 3445744 (+)

Expression


Co-expression Network