G1583101 (LOC106594044)


Basic Information

Item Value
gene id G1583101
gene name LOC106594044
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 2252243 ~ 2279420 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1812197
ACAATGCTGATTGAGTGACAAACTgtttcttacctgagcaggtgagtccaacagcattaccaggtaggcagGtgttgtgttttctgtctgaggtgtcacagtccaggagaagggactcattgcctttacactggaactctttatcccaggtctgaccctcaccttctccatagagccccccctgtagagctgcaggagccccacagccaacatccctacagactacctctgcatcctgccggtcaaagtcagcttcacacactgagg
>TU1812195
cagatcactgtgagtccaggaagGAGATCATAACTTCTGGAACACTCCCTCAGTGAAGACTCAGACCCAGAACAGAAAACTCCAAACCCTCTAGTGGTGTTTCCAGGTAGTGCTGAAACAGTGGAGCCACAACccagctgtctacacactactgcagcTACATCCCTCTGGTTCCAGCCAGCTCCCAcagtcctccactctccctggtcgtaccactccactccaccagcacagcgactgtctcttcccaccagcctcacatcatcaggctctgagaaaagaaaagagagagacaagccccccctgtagagctgcaggagccCCACAGCCAAGCTCCCCACAGACTACCTCTGCATCCTGTCGGTCAAAGtcagcttcacacactgaggcccaggactgattggacttcacctccactctcccagagcagagaccagctccatccacaagc

Function

NR:

description
PREDICTED: deleted in malignant brain tumors 1 protein-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1812197 False 267 lncRNA 0.52 2 2252243 2254188
TU1812195 True 451 lncRNA 0.55 3 2253559 2279420

Neighbor

gene id symbol gene type direction distance location
LOC118941409 NA coding upstream 88981 1942489 ~ 2163262 (+)
LOC110497256 NA coding upstream 375927 1875632 ~ 1876316 (+)
LOC118941531 LOC105006014 coding upstream 402907 1830544 ~ 1849336 (+)
trnaq-cug-118 NA coding upstream 432271 1819901 ~ 1819972 (+)
trnae-cuc-281 NA coding upstream 536154 1716018 ~ 1716089 (+)
LOC118941408 NA coding downstream 457666 2737086 ~ 2770154 (+)
LOC110518136 LOC106592283 coding downstream 490873 2770293 ~ 2811692 (+)
LOC118941397 LOC106601386 coding downstream 609543 2888963 ~ 3003056 (+)
LOC118941401 LOC106609853 coding downstream 627397 2906817 ~ 2909482 (+)
LOC118941407 LOC106591540 coding downstream 720402 2951647 ~ 3001920 (+)
G1583087 LOC106601384 non-coding upstream 825 2225573 ~ 2251418 (+)
G1583066 NA non-coding upstream 8549 2147269 ~ 2243694 (+)
G1583094 NA non-coding upstream 19996 2231804 ~ 2232247 (+)
G1583090 NA non-coding upstream 21700 2227146 ~ 2230543 (+)
G1583088 NA non-coding upstream 24297 2225902 ~ 2227946 (+)
G1583025 NA non-coding downstream 9466 2288886 ~ 2639348 (+)
G1583105 NA non-coding downstream 13365 2292785 ~ 2293202 (+)
G1583037 NA non-coding downstream 28619 2308039 ~ 2458876 (+)
G1583114 NA non-coding downstream 38677 2318097 ~ 2680206 (+)
G1583118 NA non-coding downstream 54240 2333660 ~ 2334105 (+)
G1583003 NA other upstream 51370 2198928 ~ 2200873 (+)
LOC118941396 LOC106602234 other upstream 650510 1580873 ~ 1620973 (+)
LOC110510959 LOC106602231 other upstream 687574 1400041 ~ 1564792 (+)
G1582090 LOC106602215 other upstream 1293797 810245 ~ 958446 (+)
LOC110516050 nar5 other upstream 2201052 48513 ~ 51819 (+)
G1583215 NA other downstream 534454 2765199 ~ 2815294 (+)
LOC110517772 LOC106610548 other downstream 753099 3032473 ~ 3091701 (+)
LOC110534752 LOC106602173 other downstream 1153296 3416203 ~ 3445744 (+)

Expression


Co-expression Network