G1583025


Basic Information

Item Value
gene id G1583025
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 2288886 ~ 2639348 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1812085
CACTaacatgaccccactatggaaaggtgaGTCTCTCAGGAACACATACAGGTTGTTGTGATCTAGGACACACTaacatgaccccactatggaaaggtgaGTCTCTCAGGAAGACATACAGGTTGTTGTGATCTAGGACACACTaacatgaccccactatggaaaggtgaGTCTCTCAGGAACACATACAGGTTGTTGTGATCTAGGACACACTaacatgaccccactatggaaaggtgaGTCTCTCAGGAACACATACAGGTTGTTTTGATCTAGGACGTCCACAAGCTttacaagactcgtctgaaggtctcCTGGTACCAGTTTAACACATATATGGAagtagat
>TU1812081
ctatggaaaggtgaGTCTCTCAGGAACACATACAGGTTGTTGTGATCTAGGACACACTaacatgaccccactatggaaaggtgaGTCTCTCAGGAACACATACAGGTTGTTGTGATCTAGGACACACTaacatgaccccactatggaaaggtgaGTCTCTCAGGAACACAGACAGGTTGTTGTGATCTAGGACACACTaacatgaccccactatggaaaggtgaGTCTCTCAGGAACACAGACAGGTTGTTGTGATCTAGGACACACTAACATGATCCCACTATGGAAAGGTGAGTCTCTCAGGAACACAGACAGGTTGTTGTGATCTAGGACACACTaacatgaccccactatggaaaggtgaGTCTCTCAGGAACACATACAGGTTGTTGTGATCTAGGACACACTaacatgaccccactatggaaaggtgaGTCTCTCAGGAACACATACAGGTTGTTGTGATCTAGGACACAGTaacatgaccccactatggaaaggtgaGTCTCTCAGGAAGACATACAGGT
>TU1812082
ctatggaaaggtgaGTCTCTCAGGAACACATACAGGTTGTTGTGATCTAGGACACACTaacatgaccccactatggaaaggtgaGTCTCTCAGGAACACATACAGGTTGTTGTGATCTAGGACACACTaacatgaccccactatggaaaggtgaGTCTCTCAGGAACACAGACAGGTTGTTGTGATCTAGGACACACTaacatgaccccactatggaaaggtgaGTCTCTCAGGAACACAGACAGGTTGTTGTGATCTAGGACACACTAACATGATCCCACTATGGAAAGGTGAGTCTCTCAGGAACACAGACAGGTTGTTGTGATCTAGGACACACTaacatgaccccactatggaaaggtgaGTCTCTCAGGAAGACATACAGGT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1812085 False 348 lncRNA 0.45 3 2288886 2289653
TU1812081 False 527 lncRNA 0.46 2 2638682 2639348
TU1812082 True 387 lncRNA 0.46 3 2638682 2639348

Neighbor

gene id symbol gene type direction distance location
LOC118941409 NA coding upstream 125624 1942489 ~ 2163262 (+)
LOC110497256 NA coding upstream 412570 1875632 ~ 1876316 (+)
LOC118941531 LOC105006014 coding upstream 439550 1830544 ~ 1849336 (+)
trnaq-cug-118 NA coding upstream 468914 1819901 ~ 1819972 (+)
trnae-cuc-281 NA coding upstream 572797 1716018 ~ 1716089 (+)
LOC118941408 NA coding downstream 97738 2737086 ~ 2770154 (+)
LOC110518136 LOC106592283 coding downstream 130945 2770293 ~ 2811692 (+)
LOC118941397 LOC106601386 coding downstream 249615 2888963 ~ 3003056 (+)
LOC118941401 LOC106609853 coding downstream 267469 2906817 ~ 2909482 (+)
LOC118941407 LOC106591540 coding downstream 360474 2951647 ~ 3001920 (+)
G1583101 LOC106594044 non-coding upstream 9466 2252243 ~ 2279420 (+)
G1583106 NA non-coding upstream 17534 2268508 ~ 2271352 (+)
G1583048 NA non-coding upstream 36399 2095249 ~ 2252487 (+)
G1583087 LOC106601384 non-coding upstream 37468 2225573 ~ 2251418 (+)
G1583066 NA non-coding upstream 45192 2147269 ~ 2243694 (+)
G1583199 NA non-coding downstream 26741 2666089 ~ 2685445 (+)
G1583200 NA non-coding downstream 32284 2671632 ~ 2693036 (+)
G1583201 NA non-coding downstream 41215 2680563 ~ 2710237 (+)
G1583205 NA non-coding downstream 63641 2702989 ~ 2703358 (+)
G1583039 NA non-coding downstream 66633 2705981 ~ 2734147 (+)
G1583003 NA other upstream 88013 2198928 ~ 2200873 (+)
LOC118941396 LOC106602234 other upstream 687153 1580873 ~ 1620973 (+)
LOC110510959 LOC106602231 other upstream 724217 1400041 ~ 1564792 (+)
G1582090 LOC106602215 other upstream 1330440 810245 ~ 958446 (+)
LOC110516050 nar5 other upstream 2237695 48513 ~ 51819 (+)
G1583215 NA other downstream 174526 2765199 ~ 2815294 (+)
LOC110517772 LOC106610548 other downstream 393171 3032473 ~ 3091701 (+)
LOC110534752 LOC106602173 other downstream 793368 3416203 ~ 3445744 (+)

Expression


Co-expression Network