G1583105


Basic Information

Item Value
gene id G1583105
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 2292785 ~ 2293202 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1812201
CTATAACTAAATAATTAGGCAAAATGTAATGACGTTATGCCAGCATTATTGATCTGGTCATCTGTTAATTCAGGAAGGTGGACAAGCAACACTGATGGAGTGAGAGGTAGAAATGCATTATACCAGAGGTAGGTAGACTACAGGTAGGGATGAGGATGCAGACAGAGGATGATGATGGAGTGAGAGGTAGAAATGCATTATACCAGAGGTAGGTAGACTACAGGTAGGGATTAGGATGCAGACAGAGCAACACTGATGGAGTGAGAGGTGGAAATGCATTATACCAGAGGTAGGTAGACTACAGGTAGGGATGAGGATGACAGAGGATGATGATGTAG
>TU1812202
CTATAACTAAATAATTAGGCAAAATGTAATGACGTTATGCCAGCATTATTGATCTGGTCATCTGTTAATTCAGGAAGGTGGACAAGCAACACTGATGGAGTGAGAGGTAGAAATGCATTATACCAGAGGTAGGTAGACTACAGGTAGGGATGAGGATGCAGACAGAGGATGATGATGGAGTGAGAGGTAGAAATGCATTATACCAGAGGTAGGTAGACTACAGGTAGGGATGAGGATGACAGAGGATGATGATGTAG
>TU1812203
CTATAACTAAATAATTAGGCAAAATGTAATGACGTTATGCCAGCATTATTGATCTGGTCATCTGTTAATTCAGGAAGGTGGACAAGCAACACTGATGGAGTGAGAGGTAGAAATGCATTATACCAGAGGTAGGTAGACTACAGGTAGGGATGAGGATGCAGACAGAGGATGATGATGGAGTGAGAGGTAGAAATGCATTATACCAGAGGTAGGTAGACTACAGGTAGGGATTAGGATGCAGACAGAGGATGATGATGGAGTGAGAGGTGGAAATGCATTATACCAGAGGTAGGTAGACTACAGGTAGGGATGAGGATGACAGAGGATGATGATGTAG
>TU1812204
CTATAACTAAATAATTAGGCAAAATGTAATGACGTTATGCCAGCATTATTGATCTGGTCATCTGTTAATTCAGGAAGGTGGACAAGCAACACTGATGGAGTGAGAGGTAGAAATGCATTATACCAGAGGTAGGTAGACTACAGGTAGGGATGAGGATGCAGACAGAGGATGATGATGGAGTGAGAGGTGGAAATGCATTATACCAGAGGTAGGTAGACTACAGGTAGGGATGAGGATGACAGAGGATGATGATGTAG
>TU1812205
CTATAACTAAATAATTAGGCAAAATGTAATGACGTTATGCCAGCATTATTGATCTGGTCATCTGTTAATTCAGGAAGGTGGACAAGCAACACTGATGGAGTGAGAGGTAGAAATGCATTATACCAGAGGTAGGTAGACTACAGGTAGGGATGAGGATGCAGACAGAGGATGATGATGGAGTGAGAGGTAGAAATGCATTATACCAGAGGTAGGTAGACTACAGGTAGGGATTAGGATGCAGACAGAGCAACACTGATGGAGTGAGAGGTGGAAATGCATTATACCAGAGGTAGGTAGACTACAGGTAGGGATGAGGATGACAGAGGATGATGATGTAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1812201 False 338 lncRNA 0.43 2 2292785 2293202
TU1812202 False 257 lncRNA 0.42 2 2292785 2293202
TU1812203 False 337 lncRNA 0.43 2 2292785 2293202
TU1812204 False 257 lncRNA 0.42 2 2292785 2293202
TU1812205 True 338 lncRNA 0.43 2 2292785 2293202

Neighbor

gene id symbol gene type direction distance location
LOC118941409 NA coding upstream 129523 1942489 ~ 2163262 (+)
LOC110497256 NA coding upstream 416469 1875632 ~ 1876316 (+)
LOC118941531 LOC105006014 coding upstream 443449 1830544 ~ 1849336 (+)
trnaq-cug-118 NA coding upstream 472813 1819901 ~ 1819972 (+)
trnae-cuc-281 NA coding upstream 576696 1716018 ~ 1716089 (+)
LOC118941408 NA coding downstream 443884 2737086 ~ 2770154 (+)
LOC110518136 LOC106592283 coding downstream 477091 2770293 ~ 2811692 (+)
LOC118941397 LOC106601386 coding downstream 595761 2888963 ~ 3003056 (+)
LOC118941401 LOC106609853 coding downstream 613615 2906817 ~ 2909482 (+)
LOC118941407 LOC106591540 coding downstream 706620 2951647 ~ 3001920 (+)
G1583101 LOC106594044 non-coding upstream 13365 2252243 ~ 2279420 (+)
G1583106 NA non-coding upstream 21433 2268508 ~ 2271352 (+)
G1583048 NA non-coding upstream 40298 2095249 ~ 2252487 (+)
G1583087 LOC106601384 non-coding upstream 41367 2225573 ~ 2251418 (+)
G1583066 NA non-coding upstream 49091 2147269 ~ 2243694 (+)
G1583037 NA non-coding downstream 14837 2308039 ~ 2458876 (+)
G1583114 NA non-coding downstream 24895 2318097 ~ 2680206 (+)
G1583118 NA non-coding downstream 40458 2333660 ~ 2334105 (+)
G1583120 NA non-coding downstream 58443 2351645 ~ 2704430 (+)
G1583005 LOC106592562 non-coding downstream 108727 2401929 ~ 2619707 (+)
G1583003 NA other upstream 91912 2198928 ~ 2200873 (+)
LOC118941396 LOC106602234 other upstream 691052 1580873 ~ 1620973 (+)
LOC110510959 LOC106602231 other upstream 728116 1400041 ~ 1564792 (+)
G1582090 LOC106602215 other upstream 1334339 810245 ~ 958446 (+)
LOC110516050 nar5 other upstream 2241594 48513 ~ 51819 (+)
G1583215 NA other downstream 520672 2765199 ~ 2815294 (+)
LOC110517772 LOC106610548 other downstream 739317 3032473 ~ 3091701 (+)
LOC110534752 LOC106602173 other downstream 1139514 3416203 ~ 3445744 (+)

Expression


Co-expression Network