G1583037


Basic Information

Item Value
gene id G1583037
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 2308039 ~ 2458876 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1812115
CCTTTACAGGAATATTTTATATTTCTttatcatcagagtcaaataaacataagatttctgtactatataaacactgctaatccaacaatagtgctaggtgtctgtactatataaacactgctaatacaacaatagtgtaggtgtctgtactatataaacactgctaatacaacaatagtgctaggtgtctgtactatataaacactgctaatacaacaatagtgctaggtgtctgtactatataaacactgctaatacaacaatagtgctaggtgtctgtactatataaacactgctaatccaacaatagtgctaggtgtctgtactatataaacactactaatccaacaatagtgctaggtgtctgtactatataaacactgctaatccaacaatagtgctaggtgtctgtactatataaacactgctaatccaacaatagtgtagatgtctgtactatataaacactgctaatccaacaatagtgctaggtgtctgtactatataaacactgttaatccaacaatagtgctaggtgtctgtac
>TU1812117
CCTTTACAGGAATATTTTATATTTCTttatcatcagagtcaaataaacataagatttctgtactatataaacactgctaatccaacaatagtgctaggtgtctgtactatataaacactgctaatacaacaatagtgtaggtgtctgtactatataaacactgctaatacaacaatagtgctaggtgtctgtactatataaacactgctaatacaacaatagtgctaggtgtctgtactatataaacactgctaatacaacaatagtgctaggtgtctgtactatataaacactgctaatccaacaatagtgctaggtgtctgtactatataaacactgctaatccaacaatagtgataggtgtctgtactatataaacactactaatccaacaatagtgctaggtgtctgtactatataaacactgctaatccaacaatagtgctaggtgtctgtactatataaacactgctaatccaacaatagtgtagatttctgtactatataaacactgctaatacaacaatagtgctaggtgtctgtactatataaacactgctaatccaacaatagtgtagatgtctgtactatataaacactgctaatacaacaatagtgctaggtgtctgtactatataaacactgctaatacaacaatagtgctaggtgtctgtactatatgaacactgctaatccaacaatagtgctaggtgcctgtactatataaacactgctaatccaacaatagtg
>TU1812118
CCTTTACAGGAATATTTTATATTTCTttatcatcagagtcaaataaacataagatttctgtactatataaacactgctaatccaacaatagtgctaggtgtctgtactatataaacactgctaatacaacaatagtgtaggtgtctgtactatataaacactgctaatacaacaatagtgctaggtgtctgtactatataaacactgctaatacaacaatagtgctaggtgtctgtactatataaacactgctaatacaacaatagtgctaggtgtctgtactatataaacactgctaatccaacaatagtgctaggtgtctgtactatataaacactactaatccaacaatagtgctaggtgtctgtactatataaacactgctaatccaacaatagtgctaggtgtctgtactatataaacactgctaatccaacaatagtgtagAtttctgtactatataaacactgctaatccaacaatagtgctaggtgtctgtactatataaacactgctaatccaacaatagtgctagatgtctgtactatataaacactgctaatccaacaatagtgctaggtgtctgtactatataaacactgctaatccaacaatagtgtaggtgtctgtactatataaacactgctaatccaacaatagtgctaggtgtctgtactatataaacactgctaatccaacaatagtgctaggtgtctgtactatataaacactgttaatccaacaatagtgctaggtgtctgtactatataaacactgttaatacaacaatagtgctaggtgtctgtactatataaacactgctaatccaacaatagtgctaggtgtctgtactatataaacactgctaatacaacaatagtgctaggtgtctgtactatataaacactgctaatacaacaatagtgctaggtgtctgtactatataaacactgctaatacaacaatagtgtaggtgtctgtactatataaacactgctaatccaacaatagtgctaggtgtctgtactatagaaacactgctaatccaacaatagtgctaggtgtctgtactatataaacactgctaatccaacaatagtgctaggtgtctgtactatataaacactgctaatacaacaatagtgctaggtgtctgtactatataaacactgctaatccaacaatagtgctaggtgtctgtactatattaacactgctaatacaacaatagtgctaggtgtctgtactatataaacactgctaatccaacaatagtgtagatgtctgtactatataaacactgctaatacaacaatagtgctaggtgtctgtactatataaacactgctaatacaacaatagtgctaggtgtctgtactatatgaacactgctaatccaacaatagtgctaggtgcctgtactatataaacactgctaatccaacaatagtg
>TU1812116
gctaggtgtctgtactatataaacactgcaaatccaacaatagtgctaggtgtctgtactatataaacactgttaatccaacaatagtgctaggtgtctgtactatatgaacactgctaatccaacaatagtgctaggtgtctgtactatataaacactgctaatccaacaatagtgctaggtgtctgtactatataaacactgctaatccaacaatagtgctaggtgtctgtactatataaacactgctaatccaacaatagtgctaggtgtctgtactatataaacactgctaatccaacaatagtgctaggtgtctgtactatataaacactgctaatccaacaatagtgtctgtactatataaacactgctaatccgacaatagtgctaggtgtctgtactatataaacactgctaatccaacaatagtgctaggtgtctgtactatataaacactgctaatccaacaatagtgtagatgtctgtactatataaacactgctaatacaacaatagtgctaggtgtctgtactatataaacactgctaatacaacaatagtgctaggtgtctgtactatatgaacactgctaatccaacaatagtgctaggtgtctgtactatatgaacactgctaatccaacaatagtgctagg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1812115 False 545 lncRNA 0.34 3 2308039 2308891
TU1812117 False 750 lncRNA 0.34 5 2308039 2458876
TU1812118 False 1452 lncRNA 0.34 6 2308039 2458876
TU1812116 True 658 lncRNA 0.36 3 2356719 2411151

Neighbor

gene id symbol gene type direction distance location
LOC118941409 NA coding upstream 144777 1942489 ~ 2163262 (+)
LOC110497256 NA coding upstream 431723 1875632 ~ 1876316 (+)
LOC118941531 LOC105006014 coding upstream 458703 1830544 ~ 1849336 (+)
trnaq-cug-118 NA coding upstream 488067 1819901 ~ 1819972 (+)
trnae-cuc-281 NA coding upstream 591950 1716018 ~ 1716089 (+)
LOC118941408 NA coding downstream 278210 2737086 ~ 2770154 (+)
LOC110518136 LOC106592283 coding downstream 311417 2770293 ~ 2811692 (+)
LOC118941397 LOC106601386 coding downstream 430087 2888963 ~ 3003056 (+)
LOC118941401 LOC106609853 coding downstream 447941 2906817 ~ 2909482 (+)
LOC118941407 LOC106591540 coding downstream 540946 2951647 ~ 3001920 (+)
G1583053 NA non-coding upstream 8279 2104981 ~ 2299760 (+)
G1583077 NA non-coding upstream 10474 2185572 ~ 2297565 (+)
G1583105 NA non-coding upstream 14837 2292785 ~ 2293202 (+)
G1583101 LOC106594044 non-coding upstream 28619 2252243 ~ 2279420 (+)
G1583106 NA non-coding upstream 36687 2268508 ~ 2271352 (+)
G1583151 NA non-coding downstream 5758 2464634 ~ 2465046 (+)
G1583041 LOC106594044 non-coding downstream 6949 2465825 ~ 2520479 (+)
G1583152 NA non-coding downstream 13699 2472575 ~ 2473613 (+)
G1583163 NA non-coding downstream 59246 2518122 ~ 2713339 (+)
G1583174 NA non-coding downstream 93280 2552156 ~ 2632600 (+)
G1583003 NA other upstream 107166 2198928 ~ 2200873 (+)
LOC118941396 LOC106602234 other upstream 706306 1580873 ~ 1620973 (+)
LOC110510959 LOC106602231 other upstream 743370 1400041 ~ 1564792 (+)
G1582090 LOC106602215 other upstream 1349593 810245 ~ 958446 (+)
LOC110516050 nar5 other upstream 2256848 48513 ~ 51819 (+)
G1583215 NA other downstream 354998 2765199 ~ 2815294 (+)
LOC110517772 LOC106610548 other downstream 573643 3032473 ~ 3091701 (+)
LOC110534752 LOC106602173 other downstream 973840 3416203 ~ 3445744 (+)

Expression


Co-expression Network