G1583114


Basic Information

Item Value
gene id G1583114
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 2318097 ~ 2680206 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1812217
TTACATGGCAGTTTAGAGAGCAACATCATAACACTAATCTACTTCATAATCAatataacatttataatcaataacattatctctatactactaacaacataacactaatctacatcataatcaatatcataacatttataatcaataacatcattatctctatactactaacaacataacactaatctacatcataatcaatatcataacatttataatcaacAAcattatctctatactactaacaacataacactaatctacatcataatcaatatcataacatttataatcaataacatcatgagaggtaaacaacaacaacaaacccctttattaaaaaatgtgactaataatggaaacacttcaagataaagaatctaagagacactaaataagataaagaatctaagagacactaagacaaaaaaataaagataatACTGGAACATGTAACAGACGTAATTGAGCTACTCTCTTAAAATAATTAAAAACCGATTGTTACCAAAATCCCATGTTACCGAATTCCCATGTTAAGAAAACAATAtgttacccaaaaccccatgttcccccaaaccccatgttaccccaaaccacatgttaccccaaaccccatgttacccaaaaccccatgttacccaaaaccccatgttaccc
>TU1812218
ataatcaatatcataacatttataatcaataacatcattatctctatactactaacaacataacactaatctacatcataatcaatatcataacatttataatcaataacatcatgagaggtaaacaacaacaacaaacccctttattaaaaaatgtgactaataatggaaacacttcaagataaagaatctaagagacactaaataagataaagaatctaagagacactaaataagataaagaatctaagagacactaaataagataaagaatctaagagacactaaataagataaagaatctaagacactaaataagataaagaatctaagacacactaaat

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1812217 False 657 lncRNA 0.30 5 2318097 2680206
TU1812218 True 344 lncRNA 0.24 2 2679294 2679679

Neighbor

gene id symbol gene type direction distance location
LOC118941409 NA coding upstream 154835 1942489 ~ 2163262 (+)
LOC110497256 NA coding upstream 441781 1875632 ~ 1876316 (+)
LOC118941531 LOC105006014 coding upstream 468761 1830544 ~ 1849336 (+)
trnaq-cug-118 NA coding upstream 498125 1819901 ~ 1819972 (+)
trnae-cuc-281 NA coding upstream 602008 1716018 ~ 1716089 (+)
LOC118941408 NA coding downstream 56880 2737086 ~ 2770154 (+)
LOC110518136 LOC106592283 coding downstream 90087 2770293 ~ 2811692 (+)
LOC118941397 LOC106601386 coding downstream 208757 2888963 ~ 3003056 (+)
LOC118941401 LOC106609853 coding downstream 226611 2906817 ~ 2909482 (+)
LOC118941407 LOC106591540 coding downstream 319616 2951647 ~ 3001920 (+)
G1583053 NA non-coding upstream 18337 2104981 ~ 2299760 (+)
G1583077 NA non-coding upstream 20532 2185572 ~ 2297565 (+)
G1583105 NA non-coding upstream 24895 2292785 ~ 2293202 (+)
G1583101 LOC106594044 non-coding upstream 38677 2252243 ~ 2279420 (+)
G1583106 NA non-coding upstream 46745 2268508 ~ 2271352 (+)
G1583201 NA non-coding downstream 357 2680563 ~ 2710237 (+)
G1583205 NA non-coding downstream 22783 2702989 ~ 2703358 (+)
G1583039 NA non-coding downstream 25775 2705981 ~ 2734147 (+)
G1583212 NA non-coding downstream 49625 2729831 ~ 2730727 (+)
G1583230 NA non-coding downstream 77640 2757846 ~ 2758239 (+)
G1583003 NA other upstream 117224 2198928 ~ 2200873 (+)
LOC118941396 LOC106602234 other upstream 716364 1580873 ~ 1620973 (+)
LOC110510959 LOC106602231 other upstream 753428 1400041 ~ 1564792 (+)
G1582090 LOC106602215 other upstream 1359651 810245 ~ 958446 (+)
LOC110516050 nar5 other upstream 2266906 48513 ~ 51819 (+)
G1583215 NA other downstream 133668 2765199 ~ 2815294 (+)
LOC110517772 LOC106610548 other downstream 352313 3032473 ~ 3091701 (+)
LOC110534752 LOC106602173 other downstream 752510 3416203 ~ 3445744 (+)

Expression


Co-expression Network