G1583276


Basic Information

Item Value
gene id G1583276
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 2913936 ~ 2960601 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1812476
GGTGGAAATAACCTATTATTGATCTCCTTCTCTGTATATTTTTGTGCAGTTTGTACCTCGCAGCACACCGTACAAATATGAGGTTAAACTCCTATATTACTGTTCTGCTGGCAGCAGGATAATATGCTGGCAACACAACAGTAGATTATTTtattctaaataagagtcccccTGCAAAGACAAACTCAATTTTGAGAAGATTTATTATATAGATatctagcactattgttggattagcagtgtttatatagtacagacacctagcactattgttggattagcagtgtttatatagtacagacacctagcactattgttggattagcagtgtttatatagtacagacatctacactattgttgtattagcagtgtttatatagtacaggcacctagcactattgttgtattagcagtgtttatatagtacagacacctagcactattgttgaattagcagtgtttatatagtacagacacctagcactattgttgtattagtagtgtttatatagtacagacacctagcactattgttggattagcagtgtttatatagtacagacacctagcactattgttgtattagtagtgtttatatagtacaaacacctagcactattgttgtattagcagtgtttatatagttcAGGCACCTGGTGGAACCAACTTCACATCGCCCCCCAGAAGAAAGGCACACGGACACCCACACTTCAGGTTGACTCAGTTTTTATCTGCAGTAAAAGATAACAAACAGTGATGACAGGCATTGACAGGACAGTCACAGCCACACGTTCactggttaggtaggacacaagatatatattagataggaacaacagtagtgatacatggttaggtaggacacaagatatctgttagataggaacaacagtagtgacacatggttaggtaggacacaagatatctgttagaCAGGAGCAACAATAGtgatacatggttaggtaggacacaagatatctgttagataggaacaacagtagtgatacatggttaggtaggacacaagatatatgttagataggaacaacagtagtgatacatggttaggtaggacacaagatatatgttagataggaacaacagtagtgatacatggttaggtaggacacaagatatctgttagataggaacaacagtagtgacacatggttaggtaggacacaagatatctgttagataggaacaacagtagtgatacatggttaggtaggacacaagatatatattagataggaacaacagtagtgatacatggttaggtaggacacaagatatctgttagataggaacaacaaTAGtgacacatggttaggtaggacacaagatatctgttagataggaacaacagtagtgatacatggttaggtaggacacaataTATCTGTTAGACAGGAGCAACAATAGtgatacatggttaggtaggacacaagatatctgttagataggagcaacagtagtgatacatggttaggtaggacacaagatatatgttagataggaacaacagtagtgatacatggttaggtaggacacaagatatctgttagataggaacaacagtagtgatacatggttaggtaggacacaagatatctgttagataggaGCAACAATAGtgatacatggttaggtaggacacaagatatctgttagataggaacaacagtagtgacacatggttaggtaggacacaagatatctgttagataggaGCAACAATAGtgatacatggttaggtaggacacaagatatatgttagataggaacaacagtagtgacacatggttaggtaggacacaagatatctgttagataggaacaacagtagtgatacatggttaggtaggacacaagatatctgttagataggaacaacagtagtgatacatggtta

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1812476 True 1917 lncRNA 0.37 5 2913936 2960601

Neighbor

gene id symbol gene type direction distance location
LOC118941401 LOC106609853 coding upstream 5022 2906817 ~ 2909482 (+)
LOC110518136 LOC106592283 coding upstream 102244 2770293 ~ 2811692 (+)
LOC118941408 NA coding upstream 143782 2737086 ~ 2770154 (+)
LOC118941409 NA coding upstream 750674 1942489 ~ 2163262 (+)
LOC110497256 NA coding upstream 1037620 1875632 ~ 1876316 (+)
LOC118941407 LOC106591540 coding downstream 39221 2951647 ~ 3001920 (+)
LOC110517772 LOC106610548 coding downstream 71872 3032473 ~ 3091701 (+)
LOC110510463 LOC106590758 coding downstream 144798 3105399 ~ 3128798 (+)
LOC110511406 LOC106588734 coding downstream 176047 3136648 ~ 3139833 (+)
trnae-cuc-282 NA coding downstream 261317 3221918 ~ 3221989 (+)
LOC118941397 LOC106601386 non-coding upstream 7410 2888963 ~ 3003056 (+)
G1583129 NA non-coding upstream 19373 2894005 ~ 2894563 (+)
G1583243 NA non-coding upstream 82256 2826826 ~ 2831680 (+)
G1583241 NA non-coding upstream 115198 2797284 ~ 2798738 (+)
G1583609 NA non-coding downstream 47138 3007739 ~ 3008955 (+)
G1583643 NA non-coding downstream 120424 3081025 ~ 3081338 (+)
G1583644 NA non-coding downstream 122475 3083076 ~ 3083289 (+)
G1583648 NA non-coding downstream 134824 3095425 ~ 3097219 (+)
G1583215 NA other upstream 98642 2765199 ~ 2815294 (+)
G1583003 NA other upstream 713063 2198928 ~ 2200873 (+)
LOC118941396 LOC106602234 other upstream 1312203 1580873 ~ 1620973 (+)
LOC110534752 LOC106602173 other downstream 472115 3416203 ~ 3445744 (+)
LOC110497289 LOC106610394 other downstream 523045 3483359 ~ 3492477 (+)
LOC110497294 LOC106602191 other downstream 657237 3609578 ~ 3622792 (+)
G1583951 NA other downstream 680048 3640649 ~ 3642876 (+)

Expression


Co-expression Network