G1583291 (LOC106601385)


Basic Information

Item Value
gene id G1583291
gene name LOC106601385
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 2951043 ~ 2951634 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1812497
gtgcggcttgtggatggagctggtctctgctctgggagagtggaggtgaagtccaatcagtcctgggcctcagtgtgtgaagctgactttgaccggcaggatgcagaggtagtctgtagggatgttggctgtggggctcctgcagctctacagggggggctctatggagaaggtgagggtcagacctgggataaagagttccagtgtaaaggcaatgagtcccttctcctggactgtgacacctcagacagagagaacaacacctgcctacctggtaatgctgttggactcacctgctcagagcctgatgatgtgaggctggtgggaggaggcagtcgctgtGCTGGTGTAGTGGAGCAGTCCgaccagggagagtggaggatTGTGGGAGCTGATGACTGTGATGTAgctgcagtagtgtgtagacagctggGTTGTGGCTCCACTGTTTCAGCACTACCTGGAAA

Function

NR:

description
CD5 antigen-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1812497 True 467 lncRNA 0.56 2 2951043 2951634

Neighbor

gene id symbol gene type direction distance location
LOC118941401 LOC106609853 coding upstream 42129 2906817 ~ 2909482 (+)
LOC110518136 LOC106592283 coding upstream 139351 2770293 ~ 2811692 (+)
LOC118941408 NA coding upstream 180889 2737086 ~ 2770154 (+)
LOC118941409 NA coding upstream 787781 1942489 ~ 2163262 (+)
LOC110497256 NA coding upstream 1074727 1875632 ~ 1876316 (+)
LOC118941407 LOC106591540 coding downstream 48188 2951647 ~ 3001920 (+)
LOC110517772 LOC106610548 coding downstream 80839 3032473 ~ 3091701 (+)
LOC110510463 LOC106590758 coding downstream 153765 3105399 ~ 3128798 (+)
LOC110511406 LOC106588734 coding downstream 185014 3136648 ~ 3139833 (+)
trnae-cuc-282 NA coding downstream 270284 3221918 ~ 3221989 (+)
G1583288 NA non-coding upstream 9671 2940276 ~ 2941372 (+)
G1583280 NA non-coding upstream 29571 2918392 ~ 2921472 (+)
LOC118941397 LOC106601386 non-coding upstream 44517 2888963 ~ 3003056 (+)
G1583129 NA non-coding upstream 56480 2894005 ~ 2894563 (+)
G1583173 NA non-coding downstream 1464 2953098 ~ 2954024 (+)
G1583294 NA non-coding downstream 5782 2957416 ~ 2957903 (+)
G1583609 NA non-coding downstream 56105 3007739 ~ 3008955 (+)
G1583643 NA non-coding downstream 129391 3081025 ~ 3081338 (+)
G1583215 NA other upstream 135749 2765199 ~ 2815294 (+)
G1583003 NA other upstream 750170 2198928 ~ 2200873 (+)
LOC118941396 LOC106602234 other upstream 1349310 1580873 ~ 1620973 (+)
LOC110534752 LOC106602173 other downstream 481082 3416203 ~ 3445744 (+)
LOC110497289 LOC106610394 other downstream 532012 3483359 ~ 3492477 (+)
LOC110497294 LOC106602191 other downstream 666204 3609578 ~ 3622792 (+)
G1583951 NA other downstream 689015 3640649 ~ 3642876 (+)

Expression


Co-expression Network