G1583643


Basic Information

Item Value
gene id G1583643
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 3081025 ~ 3081338 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1812958
tagttcctgccaaggcagcagctactcttcctggggtttattatggatccccattagttcctgccaaggcagcagctactcttcctggggtttattatagatccccattagttcctgtcaaggcagcagctactcttcctggggtttattatggatccccattagttcctgccaaggcagcagctactcttcctggggtttattatggatccccattagttcctgtcaaggcagcagctactcttcctggggtttattatggatccccattagttcctgccaaggcagcagctactcttcctggggtttattat

Function

NR:

description
uncharacterized protein LOC100142646

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1812958 True 314 lncRNA 0.49 1 3081025 3081338

Neighbor

gene id symbol gene type direction distance location
LOC118941397 LOC106601386 coding upstream 77969 2888963 ~ 3003056 (+)
LOC118941407 LOC106591540 coding upstream 80169 2951647 ~ 3001920 (+)
LOC118941401 LOC106609853 coding upstream 172111 2906817 ~ 2909482 (+)
LOC110518136 LOC106592283 coding upstream 269333 2770293 ~ 2811692 (+)
LOC118941408 NA coding upstream 310871 2737086 ~ 2770154 (+)
LOC110510463 LOC106590758 coding downstream 24061 3105399 ~ 3128798 (+)
LOC110511406 LOC106588734 coding downstream 55310 3136648 ~ 3139833 (+)
trnae-cuc-282 NA coding downstream 140580 3221918 ~ 3221989 (+)
trnae-cuc-283 NA coding downstream 140761 3222099 ~ 3222170 (+)
trnae-cuc-284 NA coding downstream 141975 3223313 ~ 3223384 (+)
G1583609 NA non-coding upstream 72070 3007739 ~ 3008955 (+)
G1583276 NA non-coding upstream 120424 2913936 ~ 2960601 (+)
G1583644 NA non-coding downstream 1738 3083076 ~ 3083289 (+)
LOC110517772 LOC106610548 non-coding downstream 3526 3032473 ~ 3091701 (+)
G1583648 NA non-coding downstream 14087 3095425 ~ 3097219 (+)
G1583649 NA non-coding downstream 14825 3096163 ~ 3096961 (+)
G1583653 NA non-coding downstream 16265 3097603 ~ 3101021 (+)
G1583215 NA other upstream 265731 2765199 ~ 2815294 (+)
G1583003 NA other upstream 880152 2198928 ~ 2200873 (+)
LOC110534752 LOC106602173 other downstream 351378 3416203 ~ 3445744 (+)
LOC110497289 LOC106610394 other downstream 402308 3483359 ~ 3492477 (+)
LOC110497294 LOC106602191 other downstream 536500 3609578 ~ 3622792 (+)
G1583951 NA other downstream 559311 3640649 ~ 3642876 (+)
LOC118941415 LOC106602193 other downstream 606830 3687991 ~ 3692012 (+)

Expression


Co-expression Network