G1583898 (LOC106602190)


Basic Information

Item Value
gene id G1583898
gene name LOC106602190
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 3537367 ~ 3537790 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1813363
cgagggtacaggttagtccaggtcatttgtacatgtaggtaagggtgaCAGAACAGCACACCAAGGTGCAGTAAAACCCAGACATATTCCTGTGTTACCTCGGTGAAGAGGTGCTGCACCACGGTAGCCAGGGCCTCTATCCGACGGTTGCCCTGGTCCAGGAGCCGTCGGAGCTGCTGAAGGCTCTGGTTCTTCTTCTCACACTGGGCACGGTACTGGGCCTCCGTAGCTGGCTTAGCCTCCACTAGAGCCCGGGCCGGGCGGGATGCCGAGACCACTGGTCCCTGGACTGGGAGAGggacggcagggactgggaccaGGTCTGGTTGGGGCGGCTGGGGTTGGCTGGGTCCTCCTACCTGAGTAGTGGTGCTGGTCTGGGAGAGGGTCCTCGCCAATGGCGCCCCCCGAGCCTTGTTCTTGT
>TU1813362
GGTGAAGAGGTGCTGCACCACGGTAGCCAGGGCCTCTATCCGACGGTTGCCCTGGTCCAGGAGCCGTCGGAGCTGCTGAAGGCTCTGGTTCTTCTTCTCACACTGGGCACGGTACTGGGCCTCCGTAGCTGGCTTAGCCTCCACTAGAGCCCGGGCCGGGCGGGATGCCGAGACCACTGGTCCCTGGACTGGGAGAGggacggcagggactgggaccaGGTCTGGTTGGGGCGGCTGGGGTTGGCTGGGTCCTCCTACCTGAGTAGTGGTGCTGGTCTGGGAGAGGGTCCTCGCCAATGGCGCCCCCCGAGCCTTGTTCTTGT

Function

NR:

description
proteoglycan 4-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1813363 False 424 lncRNA 0.62 1 3537367 3537790
TU1813362 True 323 lncRNA 0.66 1 3537468 3537790

Neighbor

gene id symbol gene type direction distance location
LOC110497299 fgl1 coding upstream 20912 3507304 ~ 3516455 (+)
LOC110497290 LOC106610393 coding upstream 38636 3492742 ~ 3498731 (+)
LOC110497289 LOC106610394 coding upstream 44890 3483359 ~ 3492477 (+)
LOC110497287 LOC106610389 coding upstream 55824 3471763 ~ 3481543 (+)
LOC110497285 LOC106602172 coding upstream 66809 3462658 ~ 3470625 (+)
LOC110497294 LOC106602191 coding downstream 71788 3609578 ~ 3622792 (+)
LOC118941415 LOC106602193 coding downstream 150201 3687991 ~ 3692012 (+)
LOC110534570 sgcz coding downstream 374697 3912487 ~ 4229364 (+)
LOC118941416 LOC106595337 coding downstream 842332 4380122 ~ 4385135 (+)
LOC118941417 LOC106595337 coding downstream 862870 4400660 ~ 4404928 (+)
G1583893 NA non-coding upstream 13028 3524035 ~ 3524339 (+)
G1583891 NA non-coding upstream 17276 3518913 ~ 3520091 (+)
G1583873 NA non-coding upstream 54109 3483048 ~ 3483258 (+)
G1583862 NA non-coding upstream 66342 3470797 ~ 3471025 (+)
G1583899 NA non-coding downstream 474 3538264 ~ 3539765 (+)
G1583901 NA non-coding downstream 9302 3547092 ~ 3547490 (+)
G1583903 NA non-coding downstream 11998 3549788 ~ 3551513 (+)
G1583904 NA non-coding downstream 14412 3552202 ~ 3552698 (+)
G1583906 NA non-coding downstream 18070 3555860 ~ 3556138 (+)
LOC110534752 LOC106602173 other upstream 101755 3416203 ~ 3445744 (+)
LOC110517772 LOC106610548 other upstream 465724 3032473 ~ 3091701 (+)
LOC118941397 LOC106601386 other upstream 646561 2888963 ~ 3003056 (+)
G1583215 NA other upstream 722073 2765199 ~ 2815294 (+)
G1583951 NA other downstream 102859 3640649 ~ 3642876 (+)
G1584344 NA other downstream 524878 4062668 ~ 4063226 (+)
LOC110514758 LOC106595337 other downstream 1010765 4545961 ~ 4551255 (+)

Expression


Co-expression Network