G1584292


Basic Information

Item Value
gene id G1584292
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 3959182 ~ 4038574 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1813870
atatatatataaatacagagagtaaagacagagaggaagaagagagtaaagacagacagaaagacagagagtaaagacagacagaaagacagagagtaaagacagagagaaagacagagagaaagacagagaggaagaagagagtaaagatagagagaaagacagagagtaaagacagagaggaagaagagagtaaagacagagagtaaagacagacagaaagacagagagtaaagacagacagaaagacagagagtaaagacagacagaaagacagagagtaaagacagagagaaagacagagagaaagacagagagaaaagacagagaggaaagacagagaggaagaagagagtaaagacagagagtaaagacagacagaaagacagagagtaaagacagagaggaagaaaagagtaaagatagagagaaagacagagagtaaagacagagaggaagaagagagtaaagacagacagaaagacagagagtaaagacagacagaaagacagagagtaaagacagacagaaagacagagagtaaagacagagagaaagacagagagaaagacggagagaaaagacagagagtaaagacagagagaaaagacagagagaaagacagagagaaagacagagaggaaagacagagagtaaagacagagagaaagacagagaaagacagagagaaagacagagataaagacagagagtaaagacagagaaagacagagagtaaagacagagagaaagacagagagtaaagacagagagaaaagacagagagtaaagacagagagtaaagacagagaagtaagacagagtaaagacagagagtaaagacagagagtaaagacagagagaaagacagagtaaagacagagagaaaagacagagagtaaagacagagagtaaagacagagagtaaagacagagagtaaaggcagagaggaaagacagagagtaaagacagagagaaagacagagagtaaagacagagagaaagacagagaggaaagacagagagtaaagacagagagaaagacagagagtaaagacagagagaaagacagagagtaaagacagagagtaaagacagagagtaaagacagagattaaataaag
>TU1813868
tattgtaaaatagattgtgtctgtaaaatgtgtataagatgtataaacggaaggtagaagcctaagtgttattgtttattagtttactccaattgggggaagggtggtagggtttgccgggaataataaaggtatattctaaaaaaagtatatgtatgtatgtactgtttatatgtgtatatgtatgaatgtttatgtatgcatatgtatatgtatatatatgggTATGTACGTGtatgtatatggatatatatatatttaccccaaaaatatatgtgGGATTGTAAACGATGCAGACAATTACGTTGATGGAATCAACAATCTTTccacaatattaaagctgatccacccctaaaaaaataaataacataaaaaatctaataaaaagtGAAGGCATTTGGCTGAGAATGAGAACGCTTTGGTGAAGAACAGTTGTTCACCTTCTATCAGCAGGTCAGTGACAATGTTCAAGGCTCATATAGGCCCCAAATTGCTTTTGGGAGCGAACCAAACCAACAAACAAGTTTTTGTTGGGGATCAGATATGAGCAGTTTGTTCATCTATCAACCCATCTGAAGAGGAGGTttccacagacagagagagcccagagagagaaacatagttGATTCATGGCATCTTTTATCTGGATGTTATCATCCGTCGGGCGACAAAAGTGTTCACAAAAGACCCCAATTTCTGACCTCGCTCTGTTGTCAGTTCACCACTCTGCATTGCTTGgcaagaaagacagagagaaagacagagagaaagacagagagaaaagacagagaggaagaagagagtaaagacagagagtaaagacagacagaaagacagagagtaaagacagacagaaagacagagagtaaagacagacagaaagacagagagtaaagacagagagaaagacagagagaaagacagagagaaaagacagagaggaaagacagagaggaagaagagagtaaagacagagagtaaagacagacagaaagacagagagtaaagacagagaggaagaaaagagtaaagatagagagaaagacagagagtaaagacagagaggaagaagagagtaaagacagacagaaagacagagagtaaagacagacagaaagacagagagtaaagacagacagaaagacagagagtaaagacagagagaaagacagagagaaagacggagagaaaagacagagagtaaagacagagagaaaagacagagagaaagacagagagaaagacagagaggaaagacagagagtaaagacagagagaaagacagagaaagacagagagaaagacagagataaagacagagagtaaagacagagaaagacagagagtaaagacagagagaaagacagagagtaaagacagagagaaaagacagagagtaaagacagagagtaaagacagagaagtaagacagagtaaagacagagagtaaagacagagagtaaagacagagagaaagacagagtaaagacagagagaaaagacagagagtaaagacagagagaaagacagagagtaaagacagagagtaaagacagagagtaaagacagagagaaagacagagagaaagataaaaaAATACCAACATTTTGTTTGAACGAATGCGGATAAAAAATAAAGTGAGCCATTGAGCGATTAAAGTGCCAAGTGCAGAGACTTCAAGAGGTCTGGTCTGAGTGGTTAAGCTCTCACTACGAACAGTCTAGACGCCACAAACCAAGGACTTTATCAAACGATACAAGGTACTGTAAGATTTTACTTGGCCTCCTGTAAACACAAGGGGACAGTTTATTCTTCTTGTGTTCTGGAGAGAGCGGCCGGCCGGCCCGGCTAACTAGCACCCCTGCATCCAGGCCCCTACCCATAAACCCTGTTCTCCAAGCCACGCGGGCCAGGCGACCCCCTCCCTCTGACATTGCCGGGCACTCAAATGGAGATGCATTGTTCACACAATATTTTTAAGGGTATGACTTGTCCATTAATTATAGATCACCCTATCATAGCATTCCCTGGAAAGAACACACCCGTGTTTCGCAGAAACACAGGAATAAAATATGTATTACTGGATAAATATTTGGGTGGTGAGGAAACGTG

Function

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU1813870 False 1125 lncRNA 0.39 5 3959182 4038574
TU1813868 True 2113 lncRNA 0.40 6 4016421 4019477

Neighbor

gene id symbol gene type direction distance location
LOC118941415 LOC106602193 coding upstream 267170 3687991 ~ 3692012 (+)
LOC110497294 LOC106602191 coding upstream 336390 3609578 ~ 3622792 (+)
LOC110497299 fgl1 coding upstream 442727 3507304 ~ 3516455 (+)
LOC110497290 LOC106610393 coding upstream 460451 3492742 ~ 3498731 (+)
LOC110497289 LOC106610394 coding upstream 466705 3483359 ~ 3492477 (+)
LOC118941416 LOC106595337 coding downstream 341548 4380122 ~ 4385135 (+)
LOC118941417 LOC106595337 coding downstream 362086 4400660 ~ 4404928 (+)
LOC118941418 LOC106602209 coding downstream 380127 4418701 ~ 4423685 (+)
LOC118941534 LOC106595337 coding downstream 397233 4435807 ~ 4442006 (+)
LOC110515142 LOC106602209 coding downstream 409928 4448502 ~ 4451077 (+)
G1584287 NA non-coding upstream 10393 3948380 ~ 3948789 (+)
G1584246 NA non-coding upstream 20921 3849687 ~ 3938261 (+)
G1584280 NA non-coding upstream 28816 3930110 ~ 3930366 (+)
G1584270 NA non-coding upstream 44597 3914124 ~ 3914585 (+)
G1584254 LOC106602198 non-coding upstream 55348 3867363 ~ 3903834 (+)
G1584342 NA non-coding downstream 20570 4059144 ~ 4059803 (+)
G1584395 NA non-coding downstream 149982 4188556 ~ 4188959 (+)
G1584419 NA non-coding downstream 214210 4252784 ~ 4253137 (+)
G1584450 NA non-coding downstream 263015 4301589 ~ 4301803 (+)
G1584661 NA non-coding downstream 285037 4323611 ~ 4324057 (+)
G1583951 NA other upstream 316306 3640649 ~ 3642876 (+)
LOC110534752 LOC106602173 other upstream 523570 3416203 ~ 3445744 (+)
G1584344 NA other downstream 24094 4062668 ~ 4063226 (+)
LOC110514758 LOC106595337 other downstream 509981 4545961 ~ 4551255 (+)
G1584899 NA other downstream 1083417 5121991 ~ 5128284 (+)
LOC110497310 gstcd other downstream 1391723 5428914 ~ 5491185 (+)
G1585375 NA other downstream 1409902 5448476 ~ 5448938 (+)

Expression


Co-expression Network