XLOC_003520


Basic Information

Item Value
gene id XLOC_003520
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 29207886 ~ 29208193 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00008406
CAACAGCCTAGTTAGAGCTGTAACTATAAAAATATCAGCAATGATAAAAATGATGATACTGCCAAAAACAACAGGGTGCCAACAGCTGTGCTTGCTAGCCTCATAAATTACATTTGATCAGATATTATTACCATGAAACAAGGCAAAGGCCAGAGGAGGGGTAGCttcaaatgtatttatcagaTAAAGTCTTTGAGAATGGCTTGGAAAAAGGAAAGCGGGAGAGAGAGGATGATGGCTTTTCACCTACATGGAATTGAGATTTTATGCTTCTAACTATCCGATGTGGGTAGATGAAAGCACACATA

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00008406 True 308 lncRNA 0.39 1 29207886 29208193

Neighbor

gene id symbol gene type direction distance location
XLOC_003519 NA coding upstream 371187 28797267 ~ 28836699 (+)
XLOC_003518 NA coding upstream 544490 28662904 ~ 28663396 (+)
XLOC_003517 NA coding upstream 564186 28637462 ~ 28643700 (+)
XLOC_003516 si:ch211-226m7.4 coding upstream 576544 28620683 ~ 28631342 (+)
XLOC_003515 aadacl4 coding upstream 588075 28617564 ~ 28619811 (+)
XLOC_003521 CR450796.1 coding downstream 143908 29352101 ~ 29352221 (+)
XLOC_003522 wu:fi42e03 coding downstream 329563 29537756 ~ 29540033 (+)
XLOC_003523 BX548000.1 coding downstream 358553 29566746 ~ 29571528 (+)
XLOC_003524 NA coding downstream 382680 29590873 ~ 29591196 (+)
XLOC_003525 rnf207a coding downstream 463468 29671661 ~ 29677714 (+)
XLOC_003369 CR854846.2 misc upstream 13084804 16122786 ~ 16123082 (+)
XLOC_003318 CR450764.6 misc upstream 16495890 12711700 ~ 12711996 (+)
XLOC_003317 CR450764.16 misc upstream 16513623 12693967 ~ 12694263 (+)
XLOC_003316 CR450764.11 misc upstream 16522287 12685304 ~ 12685599 (+)
XLOC_003315 CR450764.18 misc upstream 16527858 12679732 ~ 12680028 (+)
XLOC_003514 NA non-coding upstream 590927 28533224 ~ 28616959 (+)
XLOC_003513 BX649345.2 non-coding upstream 687122 28517562 ~ 28520764 (+)
XLOC_003530 NA non-coding downstream 697055 29905248 ~ 29906829 (+)
XLOC_003534 NA non-coding downstream 882962 30091155 ~ 30103960 (+)

Expression


Co-expression Network