G1584935


Basic Information

Item Value
gene id G1584935
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 5158587 ~ 5159609 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1814599
tgtgtgtgtgtgtctgtgcgtctgGTAAAAGTTATGGTTTCTTTCCACTAGGAAGATGTTAGACAGAGGACACTTTACTaagacagtctgtgtgtgtgtgtgtgtgtgtctctctctgtgtgtgtgtgtgtgtgtgtgtctgtgtgtgtgtgtctctgtgtgtgtgtgtctctgtgtgtgtgtgtctctgtgtgtgtgtgtctctgtgtgtgtgtgtgtgtctgtgtctgtgtgtgtgtgtctctgtgtgtgtgtgtctgtgtgtgtctgtgtctgtgtgtgtgtgtctctgtgtgtgtgtgtctgtgtgtctggtaaaAGTTATGGTTTCTTTCCACTAGGAAGATGTTAGACAGAGGACACTTTACTaagacagtctgtgtgtgtgtgtgtgtctctctctctgtgtgtgtgtgtgtgtgtgtgtgtctctgtgtgtgtgtgtgtgtgtgtgtgtgtctgtgtgtctgtgtgtgtgtgtgtgtctgtgtgtgtgtgtctctgtgtgtgtgtgtgtctgtgtgtgtgtgtgtctgtgtgtgtgtgtctctgtgtgtgtgtgtctctgtgtgtgtgtgtgtgtctgtgtgtctggtaaaAGTTATGGTTTCTTTCCACTAGGAAGATGTTAGACAGAGGACACTTTACTaagacagtctgtgtgtgtgtgtgtgtctctctctgtgtgtgtgtgtgtgtgtgtgtgtctctgtgtgtgtgtgtgtgtgtgtgtgtctgtgtgtctgtgtgtctgtgtgtgtgtgtgtctgtgtgtgtgtctggtaaaaGTTATGGTTTCTTTCCACTAGGAAGATGTTAGACAGAGGACACTTTACTaagacagtctgtgtgtgtctgtgtgtgtgtgtgtgtgtctgtgtgtgtgtgtgtgtgtgtgtgtctgtgtgtgtgtgtgtgtgtctctgtgtgtgtgtgtgtgtgtgtctctgtgtgtctgtgtgtgtctgtgtgtgtctgtgtgtctgtgtgtgtgtgtgtctgtgtgtctgtgtgtctgtgtgt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1814599 True 1023 lncRNA 0.47 1 5158587 5159609

Neighbor

gene id symbol gene type direction distance location
LOC100301741 mtap coding upstream 43392 5109541 ~ 5115195 (+)
LOC110497175 LOC106610327 coding upstream 62928 5093588 ~ 5095659 (+)
LOC110498597 LOC106592710 coding upstream 73761 5069016 ~ 5084826 (+)
LOC110498596 LOC106610325 coding upstream 92092 5040418 ~ 5066495 (+)
tet2 LOC106602283 coding downstream 173771 5333380 ~ 5390400 (+)
trnaa-ugc-141 NA coding downstream 235015 5394624 ~ 5394699 (+)
LOC118941427 arhgef38 coding downstream 245857 5405466 ~ 5424393 (+)
LOC110497310 gstcd coding downstream 269305 5428914 ~ 5491185 (+)
npnta npnt coding downstream 339548 5499157 ~ 5560224 (+)
G1584934 NA non-coding upstream 115 5157182 ~ 5158472 (+)
G1584932 NA non-coding upstream 6754 5151521 ~ 5151833 (+)
G1584900 cdn2b non-coding upstream 26338 5130030 ~ 5132249 (+)
G1584907 NA non-coding upstream 56204 5099116 ~ 5102383 (+)
G1584906 LOC106610368 non-coding upstream 67938 5088809 ~ 5090649 (+)
G1584936 NA non-coding downstream 994 5160603 ~ 5160972 (+)
G1584939 NA non-coding downstream 11894 5171503 ~ 5173078 (+)
G1584940 NA non-coding downstream 15571 5175180 ~ 5175414 (+)
G1584957 NA non-coding downstream 52479 5212088 ~ 5212318 (+)
G1585271 NA non-coding downstream 68600 5228209 ~ 5228536 (+)
G1584899 NA other upstream 30303 5121991 ~ 5128284 (+)
LOC110514758 LOC106595337 other upstream 609398 4545961 ~ 4551255 (+)
G1584344 NA other upstream 1095361 4062668 ~ 4063226 (+)
LOC118941415 LOC106602193 other upstream 1467603 3687991 ~ 3692012 (+)
G1583951 NA other upstream 1515711 3640649 ~ 3642876 (+)
G1585375 NA other downstream 288867 5448476 ~ 5448938 (+)
G1585483 NA other downstream 484147 5643756 ~ 5715375 (+)
G1585804 NA other downstream 649369 5808978 ~ 5812853 (+)
G1585983 NA other downstream 1010475 6169580 ~ 6170827 (+)

Expression


Co-expression Network