G1585514


Basic Information

Item Value
gene id G1585514
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 5715871 ~ 5718810 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1815317
gcactgtatctgccagctgttggctagagtgcacgagccaagaccagagtgggcacattcgctATATAACAGAAAAATAATTGTGACAAAGCCatcagagttgaaaatgcgatggaaatgCCAtttacatgtttaaatgttttatgtcttggtacatgggaatttaaccacaAAGGTTATTTTTATGTTTGGGTACATGGGAACCATAAaggttatttttatgtgcactacgtcatcacacagACTTATATCTGCAACaggtcaatttgatggaaacatctatCGTGGggaaatgtgcatattgttttaaTGCGAATttgagaatatttgcatgaaaatctatcgccaattggatggaaacctagctattgagAAACATACTGGATGGACCTCCACCAAAGTCATCTGTAGGTCCAAAAAGGAATCTGGTACATGCTTCTGATGATCCAAGAAAGTGGATGTCTAGACATCCAACAAAAGGATCTCTATTGACTTCCATTGATAATTGTGAATATCTAAGATATTCACCTTGGTCCAAGAGGACTGCCCCATGTCCAGCGCCACCCTTGGTAGAAGTGGTACTGCAATAATTTAGGCAACTTTTAACAATGAGTCCCATtttgacatactgtacagtacctgCAATTCCTTTAGGAGGCTGGACGATCCACGAAGAGAGGGCTTGACCATGTCTCCTGTGACGGGGAAATTTGCCGGCAACTCCGAGCAGCGACGGATCAACATGGGGTTGCAGCCGTTCAGATACTGGTACCCGAAAAACTCGTCTTCCTTCCAGTGCTCCTGTGCGTAGTCTGGAAGGAGGAAATTCTGGGTTGTATTAATTAGTGCACACCATAGCAAAACCTTTTGCAAcagaaaataaaatcaatagtttcttattggacaggtattccctccctgtttcagtctgttttcttccagATGATGCCTAGTAATCCAGGGTCGTtttcagtatatacagtaccagtcaaaagtttgaagctggttgagagaatgccaagagtgtgcaaagctgtcatcaagccaaagggtggcaactttgaagaatctcaaatataaaatatttgtttaacacttttttggttactacatgattccatatgtgttatttcatagttttgatgtcttcactattattctaaaatatagaaaatagtgaaaatggagaaaaaaaacttgaatgagtaggtgtgtccaatcttttgactggtactgaatgtaTATTTTTATTGGACATATTCAAGTAGTATTACTTCCCCCTTTCACTTTGTTTCAAAACGTTTACCACCTAATAAACAGGCCCCTGGAGTTAATTCTGCAAATGCACCTATGAAATGCACTCACCTGAGATGACAGTTCTATTACAGCAGAAGACTTTGCTGATTTCATCAATGTTTTTCCAGCTCTTCTTGCTGTCAGAATACCCCTTCAGTTTCAGCTCAGTGATCCTACAGAATGGGAGACAAGGAACTGTGTCAAGCTGAGACAATAGAGTTTTGCAGAGCAATTGTACAACTCAACAATATAAATGAATGGAATACTTTAGAGTTTTAATGATCTTCTGCAGGAAGTACTATTTGaactaaaggtgaaataaataaaaaatgaaataaaaaactgTCCTTAGAGGATGAATTATGCCCGACGTATGCAACGTAATTAGCTACGCAAAAATGTCTGTCCTGCATAGTTGAAAAAACATGCAAGTGTGTGCAACCCAAAATGTTAAACTCACCACGTACTGGACAAAGGAAAAAAGCTCAAATCCGCACTGAACTATTCTCAAGTTTTAATGTAATTATCAgcaggagagggcagaggaatCAGACACATTTGGGTGACATACTTCATCAGCGTTTGGAGAAAAATAAGGCATTCACACATAGTTATAATTGATGAAACATTGTAGTATCTTTTTTCACAATCATAATTTACATTCATTATTTACATACATTATTCTACTATTTTTCACAACTTCTAGTGCCTAAAAATACATTAAGATGTAGAGAATATTTTAATGAATGAGGGTTTTGGGGGGTTTTCCCCCCCAGTGCATGCCTTTTGAACCCGGCACCCAACAACTTTTAGTTACTACAGACCTTCGAGTTGAGCACGCAGATTCCTCATTCTGTAACTTACCACATAACCACATAGGGAAGCCATAATGAGGAGCACATTGCATTCTCGTGTTGTGTACTCAAGTCGGGTATACATTTGGCTTAGGTGAGGAACTCACCCGGTGGCGGCGGTGAAGAGGAACTGGGTGGCCTTGGTGAACGAGAATTGGATCTCGCTGGGAAGATCCAGAGGGTTGTCTGCCTTCATGCTGCCGGGGAAACCCTCCTTGTAGGTATCCCAGCTgagtaggaggaggagcaggaggagcaggagaaagaggaggagcaggaaATATATGGAGGTTGGTCAGATATAATGGACAGACTGGGTAGCTAGGACGAAAGACCACAGCACCTACCAGTACAGCTCAGTTCTCGTCTTCATCTCCTTTTCCCTGCTGTACCTGGCAAGATGATTAGTTTCATCACAGAGCCTTTTAGctgaaaaatataaaaaataatgaaTCAAGTTAATCACACGTATTATTGCACTAATCCTTCAGAACCAGTGTTGCATGTGTTACTGAATGTACGGTGGCCCTAAGAGGAAAAGTAGCTTTTAAAACTTAGTGACATCATGCACACACAAagaaaatgccccc

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1815317 True 2740 lncRNA 0.40 3 5715871 5718810

Neighbor

gene id symbol gene type direction distance location
npnta npnt coding upstream 155647 5499157 ~ 5560224 (+)
LOC110497310 gstcd coding upstream 224686 5428914 ~ 5491185 (+)
LOC118941427 arhgef38 coding upstream 291478 5405466 ~ 5424393 (+)
trnaa-ugc-141 NA coding upstream 321172 5394624 ~ 5394699 (+)
tet2 LOC106602283 coding upstream 325471 5333380 ~ 5390400 (+)
aimp1a aimp1 coding downstream 65160 5783970 ~ 5807227 (+)
LOC118941430 LOC106602292 coding downstream 224815 5943625 ~ 5966079 (+)
LOC110497324 LOC106602293 coding downstream 247388 5966198 ~ 5973479 (+)
LOC110497328 hadh coding downstream 253536 5972346 ~ 5975764 (+)
LOC110497334 LOC106610305 coding downstream 404143 6122953 ~ 6151945 (+)
G1585481 NA non-coding upstream 5797 5635409 ~ 5710074 (+)
G1585475 NA non-coding upstream 62991 5626657 ~ 5652880 (+)
G1585445 NA non-coding upstream 137990 5577430 ~ 5577881 (+)
G1585442 NA non-coding upstream 140077 5575093 ~ 5575794 (+)
G1585438 NA non-coding upstream 150278 5564565 ~ 5565593 (+)
G1585529 NA non-coding downstream 24511 5743321 ~ 5743542 (+)
G1585560 NA non-coding downstream 85949 5804759 ~ 5805822 (+)
G1585839 dkk2 non-coding downstream 127988 5846798 ~ 5849295 (+)
G1585848 NA non-coding downstream 149077 5867887 ~ 5868101 (+)
G1585882 NA non-coding downstream 188873 5907683 ~ 5909339 (+)
G1585483 NA other upstream 496 5643756 ~ 5715375 (+)
G1585375 NA other upstream 266933 5448476 ~ 5448938 (+)
G1584899 NA other upstream 587587 5121991 ~ 5128284 (+)
LOC110514758 LOC106595337 other upstream 1166682 4545961 ~ 4551255 (+)
G1585804 NA other downstream 90168 5808978 ~ 5812853 (+)
G1585983 NA other downstream 451274 6169580 ~ 6170827 (+)
G1586200 NA other downstream 643038 6361848 ~ 6362312 (+)
G1586672 NA other downstream 1336035 7054845 ~ 7056469 (+)
G1587727 LOC106598223 other downstream 3020734 8739544 ~ 8844780 (+)

Expression


Co-expression Network