G1585891 (papss1)


Basic Information

Item Value
gene id G1585891
gene name papss1
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 5929874 ~ 5941071 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1815717
CTGCATTCATCTCCTTGAACTTGTGTTTGAGCTCAGTGGGGGTGAGTCTGTACTGGTCCAGGCCGTCGTTCCAGCTGATCTTGTCCAGGACCTGCAGGTCTCCTCCTACCAGCCAGTCTCCACTCTCCATTACCAtCTTGATGTAGGGGTGGTCCTTGCAGGTAGTGCCCCACTGGCGGGCGCAGCGCTCCTCCTTGCGGTGCTCGTAGAACTCGGGGTTGCGGAGGATGGCCACACGGCGGCCCTCGTACACCAGGGCCATGGCCGTGACGCCGTCCAGACGCTCCTTGTCCGCCCCCGACACCGGCAACACCACCGGCACAGACAGGTTGATGACGCCGCCTAGGGGACGGGAGGGGAACAGGTGGTTTGGTTCATTGAGGGGGTCA
>TU1815719
CTGGAACTAACCACTGACCTTGATGTAGGGGTGGTCCTTGCAGGTAGTGCCCCACTGGCGGGCGCAGCGCTCCTCCTTGCGGTGCTCGTAGAACTCGGGGTTGCGGAGGATGGCCACACGGCGGCCCTCGTACACCAGGGCCATGGCCGTGACGCCGTCCAGACGCTCCTTGTCCGCCCCCGACACCGGCAACACCACCGGCACAGACAGGTTGATGACGCCGCCGTCCAGCAGACAGTCAAAGTGGAGACACTGCAGGAACTCCCTCTCCCTCATGAAGCCGTTCAGAGGGGTGGCCCAGCCCTCAGCAAGCACCTGAACCCACTGCATGTCCACCTTTCCAATCTGCACAGCAGGTAGTGTTTCAGCATCCGTCTTGGCCAGGTCCAGCTTGTTCTCAACTACGTACAACTCCTTCACTTCATAGGAAGCATCCACCGGCACTATATCCTTCTCATGTAGCAGGTCAATGAGCTGCTGTATAGACTCGTTGACACTGCAGGAGTCAGTCTTCAGCACCAGCTCTGGGGCCTCTGGTTTCTCATACTCCGAGTCTATCCCAGTGAAACCTCTGATCTCTCCAGCCCTGGCTCTCTTGTAGAGGCCCTTGACGTCTCGCTGTTCACACACGTCAAGCGGCGCGTCAACAAACACCTCGAAGAAGGGCAAGCCTGCAGCCTCGTGGATCTTCCTGGCGTTCACACGATCCCGTCCGTAGGGAGAGATGAAGCTGGCGATGCAGACGAGTCCTGCGTCGGCGAACAGGCGGGCCACCTCGGCTATACGCCTGACGTTCTCCTCGCGGTCCTCAGGGCTGAAGCCCAGGTTCTTGTTTAAGCCCTGGCGGATGTTGTCTCCATCCAGCGAGTAGCAGGGGATGCCATGGCACACCAGGTACTCCTCCAGGGCCATGCTCACCGTGGTCTTCCCAGCCCCAGACAGGCC

Function

symbol description
papss1 Predicted to enable adenylylsulfate kinase activity. Predicted to be involved in 3'-phosphoadenosine 5'-phosphosulfate biosynthetic process and sulfate assimilation. Orthologous to human PAPSS1 (3'-phosphoadenosine 5'-phosphosulfate synthase 1).

NR:

description
PREDICTED: bifunctional 3'-phosphoadenosine 5'-phosphosulfate synthase 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1815717 False 389 lncRNA 0.62 2 5929874 5934273
TU1815719 True 945 lncRNA 0.60 6 5934003 5941071

Neighbor

gene id symbol gene type direction distance location
aimp1a aimp1 coding upstream 122647 5783970 ~ 5807227 (+)
npnta npnt coding upstream 369650 5499157 ~ 5560224 (+)
LOC110497310 gstcd coding upstream 438689 5428914 ~ 5491185 (+)
LOC118941427 arhgef38 coding upstream 505481 5405466 ~ 5424393 (+)
trnaa-ugc-141 NA coding upstream 535175 5394624 ~ 5394699 (+)
LOC118941430 LOC106602292 coding downstream 2554 5943625 ~ 5966079 (+)
LOC110497324 LOC106602293 coding downstream 25127 5966198 ~ 5973479 (+)
LOC110497328 hadh coding downstream 31275 5972346 ~ 5975764 (+)
LOC110497334 LOC106610305 coding downstream 181882 6122953 ~ 6151945 (+)
LOC110497332 LOC106610302 coding downstream 265222 6206293 ~ 6222302 (+)
G1585882 NA non-coding upstream 20535 5907683 ~ 5909339 (+)
G1585848 NA non-coding upstream 61773 5867887 ~ 5868101 (+)
G1585839 dkk2 non-coding upstream 80579 5846798 ~ 5849295 (+)
G1585560 NA non-coding upstream 124052 5804759 ~ 5805822 (+)
G1585529 NA non-coding upstream 186332 5743321 ~ 5743542 (+)
G1585922 NA non-coding downstream 49904 5990975 ~ 5992041 (+)
G1585923 lef1 non-coding downstream 53342 5994413 ~ 5995647 (+)
G1585939 NA non-coding downstream 101963 6043034 ~ 6043288 (+)
G1585940 NA non-coding downstream 104643 6045714 ~ 6045993 (+)
G1585947 NA non-coding downstream 141829 6082900 ~ 6083157 (+)
G1585804 NA other upstream 117021 5808978 ~ 5812853 (+)
G1585483 NA other upstream 214499 5643756 ~ 5715375 (+)
G1585375 NA other upstream 480936 5448476 ~ 5448938 (+)
G1584899 NA other upstream 801590 5121991 ~ 5128284 (+)
G1585983 NA other downstream 229013 6169580 ~ 6170827 (+)
G1586200 NA other downstream 420777 6361848 ~ 6362312 (+)
G1586672 NA other downstream 1113774 7054845 ~ 7056469 (+)
G1587727 LOC106598223 other downstream 2798473 8739544 ~ 8844780 (+)
G1587790 LOC106610525 other downstream 2959915 8900986 ~ 8947363 (+)

Expression


Co-expression Network