G1585976


Basic Information

Item Value
gene id G1585976
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 6164513 ~ 6166667 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1815808
ttaagaacaaattcttatttacaatgatggcctaggaacagtgagttaattgccttgttcagggccagaacgacagatttttacattgtcagtttgaggattcaatctagcaacctttctgttactggcacacacctctaaccactaggctacctacatAAAGTCCTCAGGACATTTGCACTATTAAGCAAGACTGCCTTCTTGTCTTGTGCACCGGAGGTATGGTGTAGTGTACAATCCATacttcatctagatatgttagtgccactgaatgaatTGAAATGTTCATGGGAGACTGTTACAGAGTAGTGTAAATGCTTTTTTGGGGCTGGATcatattgttgtatgttttatttctgtaatgtattgattgttgcggCATTTTCGGCCATGTATCCCTTGAAAAAGCGACTCTGGGTCTCAATGTTTTTTTCCTGGTTAAAAAACAGTTAAATAAAATGGTGAACCGCGGGGCATCGGTATGTCCTTTGACGTGAATTGGCAAAAGCACTAAGGGAGGAGGAGTGCCCTTTTCAAGTCAAACAGTAGTCTGTGCCGCTCTGTCAACAAGGTCCGTCATCCAGAAACATACATAGGCCTACATCTCTTTTCCATTCAAAATATGTTTGCATTTtcaaactagttttcattgggaaagCAGATGCTTTTTTTgtcaaaagcaatcacttttaCATGTGAAAACACAGAACCGTACTCTTTACTCCACGTGCTAATTACGTTTTGAGCGGATTTCTCCGTGGGCTTGGAACCGGGCACCTGTCTCACACCCCGGAGGCAGGCCGGTTCCAAAACAAACGCAATCAACTTTCACCCGGTAAAAAAACACGCATTGTCGGGCGCCCGGGCATATTAATTGAACCCCTCAATGTTGCTCATCAACCACAAAATCCTACATGTGCATTGACAGATTCTCGccgtttcatctgtccacataaATTAGTCCCCGAGAGATTATAGTCTGGTCTCAATGAAATAGAGTAGGCTGCCTATGCGTGGGAGGAGAATCAAGTGGTAGTCGTCTTTTCAAGAAAATTACATTAAATATGATTAGACTACAGTTTACTAGTGTCTGTAAATAAATGATAATGGAAAGAAGTGGAGGCCGCTCAACCAACGTTAGTCAAGGTGCAATAATACAAATTATTGAAAAGGCGTAACGCGCGGATAGGCTATGGTGAGCGAACCTTTCATTTGCAATAAATATTAATTACCCATTTATTTGTCTCTGCCTGCAAATTATCCTCCTAAAATGTAGGCTATATCCTATATGCAAAACGTAGTTCAAGAGAATGTACAAGTGTCCGCTCTCGCTGCTCATATTCAGTAGCCACACATGCGAAATAAAGCAGTCTACATAGCCAATGCATGGGCGGagaagtgtaacagtataactttagtccgtatcctcgccgggctcgaaccagggaccctctgcacacattgacaattgacacccacgaagcatcgttaaacatcgctccacaaaatcctCGGCCCttgcgagtgacgtcaccgattgaaacgctattagcgcgcaccaccgctaactagctagccatttcacatcggttacagaaGTGTAACCAAAACAATACACTTACTGGGCAGTATAATGTAGCCATTACCCTCATCACTGTATCATTATGTGCATACATTTGTATTCAATGTCTTCTTACCTTTTATAAACATTTATATTCTCTCTTAATTTATACTTCATATAAATGTGTGGCAGAACAAACAAATGACATACATGACAACAACCACTAAACAACCTTTGCATAGGAGAACAATTCTACAAAATTATCAAATAGCAATTTAAAAACTCAGATCACCCAACGTTCATTCATTGAGAGCACATCCAGGCCCCTTCACAAGGCTTAGCACATTGTTATCAATGGAAACTTCCACAGCTCTATCCCAAGATACAGTATTGATTTCAATGTTTCTCTGGTGGCTTGACTATTCCAGAATCCCCTCTGGGTGGCAACTCATAGATCCCTCTTGACTTCAAATTTGCATATGCAGGAGTCTCTCTGGCTGTCCATGTAAGGTTTACACCCCATGTGCATGACAGCCTCAAACAGCAGGGTCACAGTATTCTCAC
>TU1815810
ATTACCCTCATCACTGTATCATTATGTGCATACATTTGTATTCAATGTCTTCTTACCTTTTATAAACATTTATATTCTCTCTTAATTTATACTTCATATAAATGTGTGGCAGAACAAACAAATGACATACATGACAACAACCACTAAACAACCTTTGCATAGGAGAACAATTCTACAAAATTATCAAATAGCAATTTAAAAACTCAGATCACCCAACGTTCATTCATTGAGAGCACATCCAGGCCCCTTCACAAGGCTTAGCACATTGTTATCAATGGAAACTTCCACAGCTCTATCCCAAGATACAGTATTGATTTCAATGTTTCTCTGGTGGCTTGACTATTCCAGAATCCCCTCTGGGTGGCAACTCATAGATCCCTCTTGACTTCAAATTTGCATATGCAGGAGTCTCTCTGGCTGTCCATGTAAGGTTTACACCCCATGTGCATGACAGCCTCAAACAGCAGGGTCACAGTATTCTCAC
>TU1815809
CCTTTTATAAACATTTATATTCTCTCTTAATTTATACTTCATATAAATGTGTGGCAGAACAAACAAATGACATACATGACAACAACCACTAAACAACCTTTGCATAGGAGAACAATTCTACAAAATTATCAAATAGCAATTTAAAAACTCAGATCACCCAACGTTCATTCATTGAGAGCACATCCAGGCCCCTTCACAAGGCTTAGCACATTGTTATCAATGGAAACTTCCACAGCTCTATCCCAAGATACAGTATTGATTTCAATGTTTCTCTGGTGGCTTGACTATTCCAGAATCCCCTCTGGGTGGCAACTCATAGATCCCTCTTGACTTCAAATTTGCATATGCAGGAGTCTCTCTGGCTGTCCATGTAAGGTTTACACCCCATGTGCATGACAGCCTCAAACAGCAGGGTCACAGTATTCTCAC
>TU1815811
CCTTTTATAAACATTTATATTCTCTCTTAATTTATACTTCATATAAATGTGTGGCAGAACAAACAAATGACATACATGACAACAACCACTAAACAACCTTTGCATAGGAGAACAATTCTACAAAATTATCAAATAGCAATTTAAAAACTCAGATCACCCAACGTTCATTCATTGAGAGCACATCCAGGCCCCTTCACAAGGCTTAGCACATTGTTATCAATGGAAACTTCCACAGCTCTATCCCAAGATACAGTATTGATTTCAATGTTTCTCTGGTGGCTTGACTATTCCAGAATCCCCTCTGGGTGGCAACTCATAGATCCCTCTTGACTTCAAATTTGCATATGCAGGAGTCTCTCTGGCTGTCCATGTAAGGTTTACACCCCATGTGCATGACAGCCTCAAACAGCAGGGTCACAGTATTCTCACAcgctgtatagagagagacatggaaacaCG

Function

NR:

description
Group XIIA secretory phospholipase A2 precursor

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1815808 False 2125 lncRNA 0.42 1 6164513 6166637
TU1815810 False 484 lncRNA 0.38 1 6166154 6166637
TU1815809 False 429 lncRNA 0.39 1 6166209 6166637
TU1815811 True 459 lncRNA 0.40 1 6166209 6166667

Neighbor

gene id symbol gene type direction distance location
LOC110497334 LOC106610305 coding upstream 12568 6122953 ~ 6151945 (+)
LOC110497328 hadh coding upstream 188749 5972346 ~ 5975764 (+)
LOC110497324 LOC106602293 coding upstream 191034 5966198 ~ 5973479 (+)
LOC118941430 LOC106602292 coding upstream 198434 5943625 ~ 5966079 (+)
aimp1a aimp1 coding upstream 357286 5783970 ~ 5807227 (+)
LOC110497332 LOC106610302 coding downstream 39626 6206293 ~ 6222302 (+)
LOC118941431 NA coding downstream 119514 6286181 ~ 6288416 (+)
LOC118941432 NA coding downstream 125402 6292069 ~ 6294461 (+)
sclt1 sclt1 coding downstream 1393743 7560410 ~ 7575349 (+)
LOC110516931 dnah6 coding downstream 1408815 7575482 ~ 7766837 (+)
G1585979 NA non-coding upstream 3290 6160996 ~ 6161223 (+)
G1585978 NA non-coding upstream 3970 6160321 ~ 6160543 (+)
G1585975 NA non-coding upstream 7876 6156437 ~ 6156637 (+)
G1585964 NA non-coding upstream 42091 6122212 ~ 6122422 (+)
G1585947 NA non-coding upstream 81356 6082900 ~ 6083157 (+)
G1585982 LOC106610304 non-coding downstream 1840 6168507 ~ 6169088 (+)
G1585983 NA non-coding downstream 2913 6169580 ~ 6170827 (+)
G1585989 NA non-coding downstream 16449 6183116 ~ 6183407 (+)
G1585991 NA non-coding downstream 19623 6186290 ~ 6186990 (+)
G1585995 NA non-coding downstream 27448 6194115 ~ 6194462 (+)
G1585804 NA other upstream 351660 5808978 ~ 5812853 (+)
G1585483 NA other upstream 449138 5643756 ~ 5715375 (+)
LOC110497310 gstcd other upstream 673366 5428914 ~ 5491185 (+)
G1585375 NA other upstream 715575 5448476 ~ 5448938 (+)
G1584899 NA other upstream 1036229 5121991 ~ 5128284 (+)
G1586200 NA other downstream 195181 6361848 ~ 6362312 (+)
G1586672 NA other downstream 888178 7054845 ~ 7056469 (+)
G1587727 LOC106598223 other downstream 2572877 8739544 ~ 8844780 (+)
G1587790 LOC106610525 other downstream 2734319 8900986 ~ 8947363 (+)

Expression


Co-expression Network