G1585983


Basic Information

Item Value
gene id G1585983
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 6169580 ~ 6170827 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1815819
agtatgacaatagagtacttttcccaccactgataTTAATCAATACAAGTGATAATCACTGTAGGCCTATAACCAATGTATTTTTCAGAAACACCACCACAATTCTCATGGACTTCCAGGAGAAACAGCAAAGTCTCCTTTCTAGTAGACTTGTTCAGTTGCATTTCAGTTTTAAGAATCACACTACCAACCTGTTTGGGTACCAAGCTGGAGCATGTAGCCATACAAATCCACATCAACACATCTTTTACAAGCCTCATGAATATGGTGAGGCCATATTAGGTTGAGAACAAGGCTTCCTGCAAAACGAAAGTGAGACTGTATACAAACTACTAGAGTAACGGATCTGTATGCCAGGGAGAATAGGCCTACAGTCTGAGTAGTATGAACACATTTTAAAAGGGTGTTTAACCTGCCCTTCCATCTGCTTCATACACACAATTGCACATGCTCTTGTGCTGGAAACAAATCAAAACTGCTTCTGGTAATAATTTATTGTTTATTCAAATGATTAATCGAGCAATGAAGAAAAACCTTGTTTTTCTACTTAAATAACTCCATAAATTTTCAAACATTCAAAATGAAAAATATACAATTGATGAAGATTATGGTTCCAACTTCACATTTTTTCCCAGGCCAAAAAAAGTTCAAGTGAGACAGTGGTCATTTCTTCATCTGCGGAATGAACTTCAAGGTCCATGTAACTCCACACAAGGTTCCACTGTGGGTTCCACTGTGGTAGCTAGGAAGCATTCTCTGGGTTCCTCACAATACTAGCACTGCTAATGTATGGACTGGAAGGAGGGCAGCATCTCCAGATGAGCCTAAAAATCTTGTTTAAGTCAAGCAGGTGAAGTAGTTATCTAGAGTGAAGAAGATTGTGATTTGCTTGTTACAGCAGAATGCTTGGCGCTTCAATACTCGAGGCACCAGCACAATGCCTTCTGCTTTTCCAGTCAGTGTTCATTTCCAGAGTGGGTTCTTATTTCCAGAAAACACAAAAAGACAAGCAAAGATAGAAGAGAAAGAAGTTGTGGTTCTCAAGTGTTTTGGGAGGTTGGTCTATTCTTCAGTTGGTTCATTGAGATGCAGCAAGGCAGTTCCCAGGAAGGAGGGGGTGGTGAGGAGGATGGAAAGATGGGTActgggggagggatggggacaACTTATAACGTCAACGGTAAggctaattatttttattttcctcCTTTCAATCTCCATGGTTTTTccttaaaaaaacacatttac
>TU1815818
CAAATGATTAATCGAGCAATGAAGAAAAACCTTGTTTTTCTACTTAAATAACTCCATAAATTTTCAAACATTCAAAATGAAAAATATACAATTGATGAAGATTATGGTTCCAACTTCACATTTTTTCCCAGGCCAAAAAAAGTTCAAGTGAGACAGTGGTCATTTCTTCATCTGCGGAATGAACTTCAAGGTCCATGTAACTCCACACAAGGTTCCACTGTGGGTTCCACTGTGGTAGCTAGGAAGCATTCTCTGGGTTCCTCACAATACTAGCACTGCTAATGTATGGACTGGAAGGAGGGCAGCATCTCCAGATGAGCCTAAAAATCTTGTTTAAGTCAAGCAGGTGAAGTAGTTATCTAGAGTGAAGAAGATTGTGATTTGCTTGTTACAGCAGAATGCTTGGCGCTTCAATACTCGAGGCACCAGCACAATGCCTTCTGCTTTTCCAGTCAGTGTTCATTTCCAGAGTGGGTTCTTATTTCCAGAAAACACAAAAAGACAAGCAAAGATAGAAGAGAAAGAAGTTGTGGTTCTCAAGTGTTTTGGGAGGTTGGTCTATTCTTCAGTTGGTTCATTGAGATGCAGCAAGGCAGTTCCCAGGAAGGAGGGGGTGGTGAGGAGGATGGAAAGATGGGTActgggggagggatggggacaACTTATAACGTCAACGGTAAggctaattatttttattttcctcCTTTCAATCTCCATGGTTTTTccttaaaaaaacacatttac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1815819 False 1248 lncRNA 0.40 1 6169580 6170827
TU1815818 True 744 TUCP 0.41 1 6170084 6170827

Neighbor

gene id symbol gene type direction distance location
LOC110497334 LOC106610305 coding upstream 17635 6122953 ~ 6151945 (+)
LOC110497328 hadh coding upstream 193816 5972346 ~ 5975764 (+)
LOC110497324 LOC106602293 coding upstream 196101 5966198 ~ 5973479 (+)
LOC118941430 LOC106602292 coding upstream 203501 5943625 ~ 5966079 (+)
aimp1a aimp1 coding upstream 362353 5783970 ~ 5807227 (+)
LOC110497332 LOC106610302 coding downstream 35466 6206293 ~ 6222302 (+)
LOC118941431 NA coding downstream 115354 6286181 ~ 6288416 (+)
LOC118941432 NA coding downstream 121242 6292069 ~ 6294461 (+)
sclt1 sclt1 coding downstream 1389583 7560410 ~ 7575349 (+)
LOC110516931 dnah6 coding downstream 1404655 7575482 ~ 7766837 (+)
G1585982 LOC106610304 non-coding upstream 492 6168507 ~ 6169088 (+)
G1585976 NA non-coding upstream 2913 6164513 ~ 6166667 (+)
G1585979 NA non-coding upstream 8357 6160996 ~ 6161223 (+)
G1585978 NA non-coding upstream 9037 6160321 ~ 6160543 (+)
G1585975 NA non-coding upstream 12943 6156437 ~ 6156637 (+)
G1585989 NA non-coding downstream 12289 6183116 ~ 6183407 (+)
G1585991 NA non-coding downstream 15463 6186290 ~ 6186990 (+)
G1585995 NA non-coding downstream 23288 6194115 ~ 6194462 (+)
G1585997 NA non-coding downstream 27759 6198586 ~ 6198960 (+)
G1585804 NA other upstream 356727 5808978 ~ 5812853 (+)
G1585483 NA other upstream 454205 5643756 ~ 5715375 (+)
LOC110497310 gstcd other upstream 678433 5428914 ~ 5491185 (+)
G1585375 NA other upstream 720642 5448476 ~ 5448938 (+)
G1584899 NA other upstream 1041296 5121991 ~ 5128284 (+)
G1586200 NA other downstream 191021 6361848 ~ 6362312 (+)
G1586672 NA other downstream 884018 7054845 ~ 7056469 (+)
G1587727 LOC106598223 other downstream 2568717 8739544 ~ 8844780 (+)
G1587790 LOC106610525 other downstream 2730159 8900986 ~ 8947363 (+)
G1587805 LOC106602251 other downstream 2822627 8993454 ~ 9063965 (+)

Expression


Co-expression Network