G1585991


Basic Information

Item Value
gene id G1585991
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 6186290 ~ 6186990 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1815836
TCATCCATTCCAACAGTTTTATTTTTCAAAATCTTTTGAGTAAATACTTCGTACAATGACAGGTAAAACGTGGCATTTCCAGTGCACCTTCATACGTGGATAATAAAGAGCCATGTGTTCAAATGTAAATTGGTTAAATGAGCAGAAAATTAAACAGAGCAGAATGTATAACATAATGTGTATAGAACAGAAGTATAAGAGAACAGAAACCGTACAGGTACATGTCTTTACAGACTCAAATCCAAAGGCTAAACCCAAAACATTTAGGCCATATCCTAACTTAAGATCCAAGTGTGCAGCTCACACGTTTCTTGTAAATCATGCATCGATTACAATGGAAGATTTGTGCTTAAAATGAGTTATGCGCTCAAATCTCTAGTCATGAGTCGGCCCTACAGAAAAGACTCAAATTGTCATATTGCAACGTTTACATTTTAAGTGCAGGCTTTTTCTAAGTGTACTATAATCAAGACTCTTTCAAGTCTGTACACCTCCATATCAAGGTAGAATGGAACCAAGATATTCAGCAATTCCTCGTTGGCAGTGGTGCCTTTAACCTTCACGTCCTCAAGCTGACGTGCGGTGGGGTGGAAGTTTGGCCACCGATGTCCCCATTGTGTTAAGGGCAGCATGGATACGGAAGTGTAGCCTCGACTCCATGCTATAACCCTTGTAGTTCAGCCTGTAAACATCCAGATACG
>TU1815838
TCATCCATTCCAACAGTTTTATTTTTCAAAATCTTTTGAGTAAATACTTCGTACAATGACAGGTAAAACGTGGCATTTCCAGTGCACCTTCATACGTGGATAATAAAGAGCCATGTGTTCAAATGTAAATTGGTTAAATGAGCAGAAAATTAAACAGAGCAGAATGTATAACATAATGTGTATAGAACAGAAGTATAAGAGAACAGAAACCGTACAGGTACATGTCTTTACAGACTCAAATCCAAAGGCTAAACCCAAAACATTTAGGCCATATCCTAACTTAAGATCCAAGTGTGCAGCTCACACGTTTCTTGTAAATCATGCATCGATTACAATGGAAGATTTGTGCTTAAAATGAGTTATGCGCTCAAATCTCTAGTCATGAGTCGGCCCTACAGAAAAGACTCAAATTGTCATATTGCAACGTTTACATTTTAAGTGCAGGCTTTTTCTAAGTGTACTATAATCAAGACTCTTTCAAGTCTGTACACCTCCATATCAAGGTAGAATGGAACCAAGATATTCAGCAATTCCTCGTTGGCAGTGGTGCCTTTAACCTTCACGTCCTCAAGCTGACGTGCGGTGGGGTGGAAGTTTGGCCACCGATGTCCCCATTGTGTTAAGGGCAGCATGGATACGGAAGTGTAGCC
>TU1815837
AAATACTTCGTACAATGACAGGTAAAACGTGGCATTTCCAGTGCACCTTCATACGTGGATAATAAAGAGCCATGTGTTCAAATGTAAATTGGTTAAATGAGCAGAAAATTAAACAGAGCAGAATGTATAACATAATGTGTATAGAACAGAAGTATAAGAGAACAGAAACCGTACAGGTACATGTCTTTACAGACTCAAATCCAAAGGCTAAACCCAAAACATTTAGGCCATATCCTAACTTAAGATCCAAGTGTGCAGCTCACACGTTTCTTGTAAATCATGCATCGATTACAATGGAAGATTTGTGCTTAAAATGAGTTATGCGCTCAAATCTCTAGTCATGAGTCGGCCCTACAGAAAAGACTCAAATTGTCATATTGCAACGTTTACATTTTAAGTGCAGGCTTTTTCTAAGTGTACTATAATCAAGACTCTTTCAAGTCTGTACACCTCCATATCAAGGTAGAATGGAACCAAGATATTCAGCAATTCCTCGTTGGCAGTGGTGCCTTTAACCTTCACGTCCTCAAGCTGACGTGCGGTGGGGTGGAAGTTTGGCCACCGATGTCCCCATTGTGTTAAGGGCAGCATGGATACGGAAGTGTAGCC
>TU1815839
AAATACTTCGTACAATGACAGGTAAAACGTGGCATTTCCAGTGCACCTTCATACGTGGATAATAAAGAGCCATGTGTTCAAATGTAAATTGGTTAAATGAGCAGAAAATTAAACAGAGCAGAATGTATAACATAATGTGTATAGAACAGAAGTATAAGAGAACAGAAACCGTACAGGTACATGTCTTTACAGACTCAAATCCAAAGGCTAAACCCAAAACATTTAGGCCATATCCTAACTTAAGATCCAAGTGTGCAGCTCACACGTTTCTTGTAAATCATGCATCGATTACAATGGAAGATTTGTGCTTAAAATGAGTTATGCGCTCAAATCTCTAGTCATGAGTCGGCCCTACAGAAAAGACTCAAATTGTCATATTGCAACGTTTACATTTTAAGTGCAGGCTTTTTCTAAGTGTACTATAATCAAGACTCTTTCAAGTCTGTACACCTCCATATCAAGGTAGAATGGAACCAAGATATTCAGCAATTCCTCGTTGGCAGTGGTGCCTTTAACCTTCACGTCCTCAAGCTGACGTGCGGTGGGGTGGAAGTTTGGCCACCGATGTCCCCATTGTGTTAAGGGCAGCATGGATACGGAAGTGTAGCCTCGACTCCATGCTATAACCCTTGTAGTTCAGCCTGTAAACATCCAGATACG

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1815836 False 701 lncRNA 0.40 1 6186290 6186990
TU1815838 False 650 lncRNA 0.39 1 6186290 6186939
TU1815837 False 609 lncRNA 0.40 1 6186331 6186939
TU1815839 True 660 lncRNA 0.41 1 6186331 6186990

Neighbor

gene id symbol gene type direction distance location
LOC110497334 LOC106610305 coding upstream 34345 6122953 ~ 6151945 (+)
LOC110497328 hadh coding upstream 210526 5972346 ~ 5975764 (+)
LOC110497324 LOC106602293 coding upstream 212811 5966198 ~ 5973479 (+)
LOC118941430 LOC106602292 coding upstream 220211 5943625 ~ 5966079 (+)
aimp1a aimp1 coding upstream 379063 5783970 ~ 5807227 (+)
LOC110497332 LOC106610302 coding downstream 19303 6206293 ~ 6222302 (+)
LOC118941431 NA coding downstream 99191 6286181 ~ 6288416 (+)
LOC118941432 NA coding downstream 105079 6292069 ~ 6294461 (+)
sclt1 sclt1 coding downstream 1373420 7560410 ~ 7575349 (+)
LOC110516931 dnah6 coding downstream 1388492 7575482 ~ 7766837 (+)
G1585989 NA non-coding upstream 2883 6183116 ~ 6183407 (+)
G1585983 NA non-coding upstream 15463 6169580 ~ 6170827 (+)
G1585982 LOC106610304 non-coding upstream 17202 6168507 ~ 6169088 (+)
G1585976 NA non-coding upstream 19623 6164513 ~ 6166667 (+)
G1585979 NA non-coding upstream 25067 6160996 ~ 6161223 (+)
G1585995 NA non-coding downstream 7125 6194115 ~ 6194462 (+)
G1585997 NA non-coding downstream 11596 6198586 ~ 6198960 (+)
G1586011 NA non-coding downstream 31517 6218507 ~ 6218830 (+)
G1586019 NA non-coding downstream 64137 6251127 ~ 6251362 (+)
G1585804 NA other upstream 373437 5808978 ~ 5812853 (+)
G1585483 NA other upstream 470915 5643756 ~ 5715375 (+)
LOC110497310 gstcd other upstream 695143 5428914 ~ 5491185 (+)
G1586200 NA other downstream 174858 6361848 ~ 6362312 (+)
G1586672 NA other downstream 867855 7054845 ~ 7056469 (+)
G1587727 LOC106598223 other downstream 2552554 8739544 ~ 8844780 (+)
G1587790 LOC106610525 other downstream 2713996 8900986 ~ 8947363 (+)
G1587805 LOC106602251 other downstream 2806464 8993454 ~ 9063965 (+)

Expression


Co-expression Network