G1587395 (LOC106569656)


Basic Information

Item Value
gene id G1587395
gene name LOC106569656
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 8091427 ~ 8210499 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1817548
TCAGTACTCTGTCACTGTCTGCACTGTGCTGGAAAATGGAAAGAAAAGTCGACTGGTGTCAACAACCCTCACCACAGTACTTCCTGCTCCAGACCAGCTGACTGTTGACTCAGTGGACACCACATCAGCTGCTGTTAGCTGGAGTCAGCCACCAGGATTGAACCAAACCCAACATCATTATCATTACCAAATCTCCTACCAGTGTCCAGGGACAAAACCACACATCACTACCACATCTTCACACAGCATCAGTCTCTCTGACCTGCAATGTGGTACTCAGTACTCCGTCACTGTCTGCACTGTGCTGGAAAATGGAAAGCAAAGTCAACTGGTGTCAACAACCCTAACCACAGAACATGTTCAGTGGTGGAAGAGGCCCTCCAGAGTTGCTGCAGTGTTTGTTCTACTGGCTGTGATCATTGGCCTGTGGGATTCCTATGCAACTTCAGAGCgagaccagctacagaatagTCTAAATACcaggaccacagagagagaccagctacagaccagttacaacaccctgactaaagagagagaccagctacagaccagttacaacaccctgactatagagagagaccagctacagagtAGTCTAAATACCAGAACCACTGAAATAGACAAGTTGAAGAAGAGTCTGAACACTACAACTATGGAGCGTGACCAGCTACAGAAGGAGATAGAAAGACTGAACTGGGAGAACAAAGGTAAATGTGTACAAAGGGCCCACCTTTTTATTTGCTTCCTGATCCACAGTTTCTGTAGTTGACCTGTTATCTCACACAAGCATATTAAAGAAGTATTGTCAATGCTATCCATGACCATTAGGACCAGAAACAAATTAAATTGACTGGAGCTGTGTTGTGCCTTTTCGCTCAACACACGCCACGGGAGATCAGAGGTCATCAGAACTACCTAGAACTCagattgtattatttttttaggGGGTAGGTCATTTTTAATGTTGCAGATTGTGGCTTCCTTCAATGTGGAGCGGCAGggtaggggcagcagggtagcctagtggttagattgttggactagtaaccgaaaggttggaagatcgaatccccgagctgacaaggtagatttctgtcgttctgcccctgaacaaggcagttaacccactgttcctaggctgtcattgtaaataagaatttgttcttaactgacttgcctagttaaataattatatataaaaacatgtaaTTGTCTGcaccatttccaatccccc

Function

NR:

description
fibronectin-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1817548 True 1237 lncRNA 0.45 5 8091427 8210499

Neighbor

gene id symbol gene type direction distance location
LOC110534596 LOC106596936 coding upstream 25723 8058298 ~ 8065704 (+)
LOC118941540 NA coding upstream 47622 8037794 ~ 8043805 (+)
LOC110516931 dnah6 coding upstream 324590 7575482 ~ 7766837 (+)
sclt1 sclt1 coding upstream 516078 7560410 ~ 7575349 (+)
LOC118941432 NA coding upstream 1796966 6292069 ~ 6294461 (+)
LOC110513700 NA coding downstream 156921 8367420 ~ 8368960 (+)
LOC118941437 LOC106594846 coding downstream 288788 8499287 ~ 8506656 (+)
LOC110534718 NA coding downstream 397665 8608164 ~ 8609344 (+)
LOC110498609 LOC106610517 coding downstream 401427 8611926 ~ 8626846 (+)
LOC110497214 LOC106610534 coding downstream 416795 8627294 ~ 8640224 (+)
G1587336 NA non-coding upstream 58421 8031487 ~ 8033006 (+)
G1587291 NA non-coding upstream 66029 7939949 ~ 8025398 (+)
G1587297 NA non-coding upstream 78128 7951984 ~ 8013299 (+)
G1587317 NA non-coding upstream 95311 7995830 ~ 7996116 (+)
G1587314 NA non-coding upstream 102523 7988027 ~ 7988904 (+)
G1587433 NA non-coding downstream 8044 8218543 ~ 8219545 (+)
G1587434 NA non-coding downstream 9049 8219548 ~ 8221232 (+)
G1587439 NA non-coding downstream 34514 8245013 ~ 8245475 (+)
G1587440 NA non-coding downstream 39979 8250478 ~ 8255121 (+)
G1587445 NA non-coding downstream 58873 8269372 ~ 8280135 (+)
G1586672 NA other upstream 1034958 7054845 ~ 7056469 (+)
G1586200 NA other upstream 1729115 6361848 ~ 6362312 (+)
G1585983 NA other upstream 1920600 6169580 ~ 6170827 (+)
G1585804 NA other upstream 2278574 5808978 ~ 5812853 (+)
G1585483 NA other upstream 2376052 5643756 ~ 5715375 (+)
G1587727 LOC106598223 other downstream 529045 8739544 ~ 8844780 (+)
G1587790 LOC106610525 other downstream 690487 8900986 ~ 8947363 (+)
G1587805 LOC106602251 other downstream 782955 8993454 ~ 9063965 (+)
G1588177 LOC106610450 other downstream 1132360 9342859 ~ 9413146 (+)
LOC110514468 LOC106602219 other downstream 1213266 9422781 ~ 9425478 (+)

Expression


Co-expression Network