G1587433


Basic Information

Item Value
gene id G1587433
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 8218543 ~ 8219545 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1817590
tgtagatatcaacactatactatcaccagataactgacctgttatagtgtagatgtcagaacactatactatcaccagataactgacctgttatagtagtgtagatgtcagaacactatactatcaccagataactgacctgttatagtagtgtagatatcaacactatactatcaccagataactgacctgttatagtagtgtagatatcaacactatactatcaccagataactgacctgttatagtgTAGATGTCAgaacactatactatcaccagataactgacctgttatagtagtggagatgtcaacactatactatcaccagataactgacctgttatagtagtgtagatgtcaacactatactatcaccagataactgacctgttatagtagtgtagatgtcagaacactatactatcaccagataactgacctgttatagtagtgtagatgtcaacattatactatcaccagataactgacctgttatagtagtgtagatgtctaGAACACTATAatatcaccagataactgac
>TU1817589
aacactatactatcaccagataactgacctgttatagtagtgtagatgtcaGAACACTATAatatcaccagataactgacctgttatagtagtgtagatgtcagaacactatactatcaccagataactgacctgttatagtagtgtagatgtcagaacactatactatcaccagataactgacctgttatagtagtgtagatatcaacactatactatcaccagataactgacctgttatagtagtgtagatatcaacactatactatcaccagataactgacctgttatagtgTAGATGTCAgaacactatactatcaccagataactgacctgttatagtagtggagatgtcaacactatactatcaccagataactgacctgttatagtagtgtagatgtcaacactatactatcaccagataactgacctgttatagtagtgtagatgtcagaacactatactatcaccagataactgacctgttatagtagtgtagatgtcaacattatactatcaccagataactgacctgttatagtagtgtagatgtctaGAACACTATAatatcaccagataactgac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1817590 False 543 lncRNA 0.36 3 8218543 8219545
TU1817589 True 588 lncRNA 0.36 2 8218600 8219545

Neighbor

gene id symbol gene type direction distance location
LOC110511263 LOC106577284 coding upstream 970 8204452 ~ 8217573 (+)
LOC110534593 LOC106610539 coding upstream 81908 8071619 ~ 8136635 (+)
LOC110534596 LOC106596936 coding upstream 152839 8058298 ~ 8065704 (+)
LOC118941540 NA coding upstream 174738 8037794 ~ 8043805 (+)
LOC110516931 dnah6 coding upstream 451706 7575482 ~ 7766837 (+)
LOC110513700 NA coding downstream 147875 8367420 ~ 8368960 (+)
LOC118941437 LOC106594846 coding downstream 279742 8499287 ~ 8506656 (+)
LOC110534718 NA coding downstream 388619 8608164 ~ 8609344 (+)
LOC110498609 LOC106610517 coding downstream 392381 8611926 ~ 8626846 (+)
LOC110497214 LOC106610534 coding downstream 407749 8627294 ~ 8640224 (+)
G1587401 NA non-coding upstream 170 8139244 ~ 8218373 (+)
G1587395 LOC106569656 non-coding upstream 8044 8091427 ~ 8210499 (+)
G1587400 NA non-coding upstream 98203 8116224 ~ 8120340 (+)
G1587336 NA non-coding upstream 185537 8031487 ~ 8033006 (+)
G1587297 NA non-coding upstream 205244 7951984 ~ 8013299 (+)
G1587434 NA non-coding downstream 3 8219548 ~ 8221232 (+)
G1587439 NA non-coding downstream 25468 8245013 ~ 8245475 (+)
G1587440 NA non-coding downstream 30933 8250478 ~ 8255121 (+)
G1587445 NA non-coding downstream 49827 8269372 ~ 8280135 (+)
G1587457 NA non-coding downstream 94923 8314468 ~ 8315598 (+)
G1586672 NA other upstream 1162074 7054845 ~ 7056469 (+)
G1586200 NA other upstream 1856231 6361848 ~ 6362312 (+)
G1585983 NA other upstream 2047716 6169580 ~ 6170827 (+)
G1585804 NA other upstream 2405690 5808978 ~ 5812853 (+)
G1585483 NA other upstream 2503168 5643756 ~ 5715375 (+)
G1587727 LOC106598223 other downstream 519999 8739544 ~ 8844780 (+)
G1587790 LOC106610525 other downstream 681441 8900986 ~ 8947363 (+)
G1587805 LOC106602251 other downstream 773909 8993454 ~ 9063965 (+)
G1588177 LOC106610450 other downstream 1123314 9342859 ~ 9413146 (+)
LOC110514468 LOC106602219 other downstream 1204220 9422781 ~ 9425478 (+)

Expression


Co-expression Network