G1587965 (LOC106591138)


Basic Information

Item Value
gene id G1587965
gene name LOC106591138
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 8734908 ~ 8736158 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1818272
gattaattggcggagtagaggagtttgtgcatttcaggtaaaataactcaatgtttatatcacaggacaaattagctagcaacagcaagctagctcaataggacaaattagctagcaagtgcaagctaactagataaattgccatacatgtttaatgtttaatgccggtttgggttccgtgtaaatAAACATcttactttttacattttttataattaGGGAACATCCTTACTTGTAATGAGGGTTGTTGACACCAGTTGACTTTGCCTTCCATCTTCCAGCACAGTGCAGAGAGTGACGGAGTACTGAGTACCACCTTGCAGGTCAGAAAGAGTGATGCTGTGTGAAGATGTGGTAGTGATGTGTTGTTCTGTCCCTGGACAGCGGTAGGAGATCTTGTAATGATGTTGGGTTTGGTCCAATCCTGGTGGCTGGCTCCAGCTAACAGCAGCTGATGTGGTATCCACTGAGTCAACAGTCAGCTGGTCTGGAACAGGGGGTACTAAGGGGAAATATATTATTGTCAGGGCTACAGTTTAACTCCAGAAACATATTACAACATATTATACGCAGGTTTTGGGGTTTTGCTCATTTTTGTTTTTGAGGATGGTTCTGTTTGGGTTTGACCTGATTGGAATCATCCTCGTTGTACAGGATGTGTTTCACCTGTTGCCTCATTAGTCAGTTGTGCTGGCACAGGGGATATTTAAGAGCAGCTGACCATTTGCTCCATTTGGCATGAGAGATGCTGGAAGTTCTTTACCACGGTTTAGCtctttatttattgtatttttttatttcacctttatttaaccaggtaggctagtggagaacaagttctcatttgcaactgcgacctggccaagataaagcatagcagtgtgaacagacaacacagagttacacatggagtaaacaattaacaagtcagtaacacagtagaaaaaaaggggagtctatatacattgtgtgcaaaaggcatgagaaggtaggcgaataattacaattatgcagattaacactggagtgataaattatcagatggtcatgtacaggtagagatattggtgtgcaaaagagcagaaaagtacatacataaaaacagtatggggatgaggtaggtaaagttgggtgggctgtttaccgagagactatgtacagctgcagcgatcggttagctgctcagatagcagatgtttgaagttggtgagggagatacaagtctccaacttcagcgatttttgcaattcg

Function

NR:

description
up-regulator of cell proliferation-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1818272 True 1251 lncRNA 0.41 1 8734908 8736158

Neighbor

gene id symbol gene type direction distance location
LOC118936568 LOC106610491 coding downstream 79426 8645589 ~ 8655482 (-)
LOC110497211 LOC106610489 coding downstream 135434 8538027 ~ 8599474 (-)
LOC110497208 LOC106610467 coding downstream 210594 8521512 ~ 8524314 (-)
LOC110497209 timm10 coding downstream 213790 8518920 ~ 8521118 (-)
LOC118936358 unc93b1 coding downstream 216144 8508698 ~ 8518764 (-)
LOC110497222 LOC106610496 coding upstream 69304 8805462 ~ 8809619 (-)
LOC118941442 LOC106610527 coding upstream 111843 8848001 ~ 8874372 (-)
LOC118941444 LOC106610501 coding upstream 221907 8958065 ~ 8960469 (-)
LOC118941443 NA coding upstream 229367 8965525 ~ 8971363 (-)
LOC110497226 LOC106610522 coding upstream 259050 8995208 ~ 9004935 (-)
G1587963 LOC106610528 non-coding downstream 3255 8731422 ~ 8731653 (-)
G1587962 LOC106610528 non-coding downstream 6557 8728006 ~ 8728351 (-)
G1587961 NA non-coding downstream 9677 8724851 ~ 8725231 (-)
G1587956 NA non-coding downstream 19080 8672713 ~ 8715828 (-)
G1587949 NA non-coding downstream 84322 8650288 ~ 8650586 (-)
G1587970 NA non-coding upstream 69630 8805788 ~ 8806121 (-)
G1587972 NA non-coding upstream 71667 8807825 ~ 8808229 (-)
G1587985 NA non-coding upstream 86814 8822972 ~ 8823474 (-)
G1587989 NA non-coding upstream 93237 8829395 ~ 8831687 (-)
G1587990 NA non-coding upstream 95891 8832049 ~ 8833674 (-)
G1587567 NA other downstream 400030 8243558 ~ 8334878 (-)
G1587522 LOC106598223 other downstream 509875 8146257 ~ 8225033 (-)
LOC110500908 LOC106592107 other downstream 841629 7886301 ~ 7908783 (-)
G1587221 NA other downstream 961474 7773043 ~ 7773434 (-)
G1586560 NA other downstream 1855151 6879326 ~ 6879757 (-)
G1588003 LOC106610497 other upstream 166697 8902855 ~ 8953676 (-)
LOC110498432 NA other upstream 1400702 10134147 ~ 10145900 (-)
LOC110497368 LOC106610221 other upstream 2388230 11115879 ~ 11212126 (-)
G1590098 LOC106577701 other upstream 2534358 11270516 ~ 11270818 (-)

Expression


Co-expression Network