G1587989


Basic Information

Item Value
gene id G1587989
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 8829395 ~ 8831687 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1818297
GCCAATTTCCATAGCTGTGGGAAGTAAGGGTGCTGAAGGTGCTGTAAAAATAAGATAAATcatagatatatacagtggggagaacaagtatttgatacactgccgattttgcaggttttactaCTTGCAAAGCAtctagaggtctgtaatttttatcataggtacacttcaactgtgagagacggaatctaaaaatccagaaaatcacattgtatgatttttaagtaattcatttgcattttatgaggaaggtgagggatcagcccagaactacacggcaggacctggtcaatgatctgaagagagctgggaccacagtctgttttagattctgtctctcacagtggaagtgtacctatgatacaaattacagacctctacatgctctgtaagtaggaaaacctgcaaaatcgacagtgaatcaaatacttgttctccccactgtatatatagacaGACAGTTCAAACAAGCTGAGCTGATCTGACATAGTCGTTTGACAGCTGTCATACAGAATATAAGTGAttatctctttctatttctctatccctccctccctctctctcactgtctttctagcccactgtctttctctctggtcTCGCTCTCCTTCTGTCATTGTGGCCCTATTGTAATCCATTCCAATCATTCTAGAACATACCAGACAACGCAAATCTCATATACAGTAGATGAAGAAAACACaatcacactacacactacaggtcTATAGGAAATTATGGAGAGCGTGGGAGTATCAATGGGAAATATGGAACAAtccagtgagagagagtgagagagagtgagagtgagagagagaaatagagagagagaaatagagagtgagagatagacatagagagagcgagtgagacggAGATAGAAGagataagaagagagagaaagacagaaagagggacCATTGTTAAAGTAACAGACTAGATCAGGGGTACGTAACCCTGTACCATGAGTGCTGCAGGAACTGCAGGGTTTTGTTCCAACTAGGCTTcacacctgaccaactgagctaattgatcaaaCCTGCCCAGAGTGTACAAAGCTATACATGCATGTACCTACTACATATACAAGAAccaacacaatatatatataatgatggTATCTTCTGTGATGACAATCTAAAACCTGTCAACTTCCAAATGAACAAGCAACGACATGCTGCTGCTGTTGGCCTCAATGGTTGATGTAGTGTAGAACTAtaatatgtgtgtgagtgtttgtttgtttcacaGTTCATTCTGAGATATCTGATGCCTGGATATGTGtactagagagaggggagagaggagaggaggagagagaggagagaaggagggaggggagagaagaggaggagagagagaaaggaggaaagagaggagaggaggaaagatcGGGGAGATGTATCTTGCAGTGGAAAATATACAAATGTGTCTTTTGATGGAAAACCCATGAGACAGATGAACTAGTGAATGAATCAGTGTTGCGTGAGTCAGTAGGACTAGACAGATGATGACTAGATGTTACAACAgatgaaacacacacaacacagcagaCTATTGCATTTAACTTGATTAAAGTTCCGCTCAACCTTCAAGAGGCTCAGAGGAAAGGGTCAGGAAGCAgtcacacacgcagacagacgcAGGCTCACACacgtaagaacacacacacgt

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1818297 True 1671 lncRNA 0.42 2 8829395 8831687

Neighbor

gene id symbol gene type direction distance location
LOC110497222 LOC106610496 coding downstream 19776 8805462 ~ 8809619 (-)
LOC118936568 LOC106610491 coding downstream 173913 8645589 ~ 8655482 (-)
LOC110497211 LOC106610489 coding downstream 229921 8538027 ~ 8599474 (-)
LOC110497208 LOC106610467 coding downstream 305081 8521512 ~ 8524314 (-)
LOC110497209 timm10 coding downstream 308277 8518920 ~ 8521118 (-)
LOC118941442 LOC106610527 coding upstream 16314 8848001 ~ 8874372 (-)
LOC118941444 LOC106610501 coding upstream 126378 8958065 ~ 8960469 (-)
LOC118941443 NA coding upstream 133838 8965525 ~ 8971363 (-)
LOC110497226 LOC106610522 coding upstream 163521 8995208 ~ 9004935 (-)
LOC110497236 LOC106610374 coding upstream 206605 9038292 ~ 9042976 (-)
G1587985 NA non-coding downstream 5921 8822972 ~ 8823474 (-)
G1587972 NA non-coding downstream 21166 8807825 ~ 8808229 (-)
G1587970 NA non-coding downstream 23274 8805788 ~ 8806121 (-)
G1587965 LOC106591138 non-coding downstream 93237 8734908 ~ 8736158 (-)
G1587963 LOC106610528 non-coding downstream 97742 8731422 ~ 8731653 (-)
G1587990 NA non-coding upstream 362 8832049 ~ 8833674 (-)
G1587991 NA non-coding upstream 2278 8833965 ~ 8835000 (-)
G1588004 NA non-coding upstream 22554 8854241 ~ 8931288 (-)
G1588022 NA non-coding upstream 64171 8895858 ~ 8896563 (-)
G1588029 NA non-coding upstream 84464 8916151 ~ 8939652 (-)
G1587567 NA other downstream 494517 8243558 ~ 8334878 (-)
G1587522 LOC106598223 other downstream 604362 8146257 ~ 8225033 (-)
LOC110500908 LOC106592107 other downstream 936116 7886301 ~ 7908783 (-)
G1587221 NA other downstream 1055961 7773043 ~ 7773434 (-)
G1586560 NA other downstream 1949638 6879326 ~ 6879757 (-)
G1588003 LOC106610497 other upstream 71168 8902855 ~ 8953676 (-)
LOC110498432 NA other upstream 1305173 10134147 ~ 10145900 (-)
LOC110497368 LOC106610221 other upstream 2292701 11115879 ~ 11212126 (-)
G1590098 LOC106577701 other upstream 2438829 11270516 ~ 11270818 (-)

Expression


Co-expression Network