G1587824


Basic Information

Item Value
gene id G1587824
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 8957102 ~ 8957976 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1818078
CGCTATCACTTAGGTACGTCATTCTTTTTTTACACTTCTCTATCACTTAGGTACGTCGTTCTTTTTTTACTCTTCGCTATCACTTAGGTACGTCATTCTTTTTTTACACTTCGCTATCACTTAGGTACGTCATTCTTTTTTTACACTTCGCTATCACTTAGGTACGTCATTCTTTTTTTACACTTCGCTATCACTTAGGTACGTCGTTCTTTTTTTACACTACGTCATCACTTAGGTACGTCGTTCTTTTTTTACACTTCGCTATCACTTAGGTACGTCATTCTTTTTTTACACTTCGCTATCACTTAGGTAAGTCGTTCTTTTTTTACACTTCGCTATCACTTAGGTACGTCATTCTTTTTTTACACTACGTCATCACTTAGGTACGTCGTTCTTTTTTTACACTTCGCTATCACTTAGGTACGTCATTCTTTTTTTACACTTCGCTATCACTTAGGTACGTCGTTCTTTTTTTACACTTCGCTATCACTTAGGTACGTCGTTCTTTTTTTACACTACGTCATCACTTAGGTACGTCGTTCTTTTTTTACACTTCGCTATCACTTAGGTACGTCGTTCTTTTTTTACACTACGTCATCACTTAGGTACGTCGTTCTTTTTTTACACTTCGCTATCACTTAGGTACGTCATTCTTTTTTTACACTTCGCTATCACTTAGGTACGTCGTTCTTTTTTTACACTTCGCTATCACTTAGGTACGTCGTTC
>TU1818079
CGCTATCACTTAGGTACGTCATTCTTTTTTTACACTTCTCTATCACTTAGGTACGTCGTTCTTTTTTTACTCTTCGCTATCACTTAGGTACGTCATTCTTTTTTTACACTTCGCTATCACTTAGGTACGTCATTCTTTTTTTACACTTCGCTATCACTTAGGTACGTCATTCTTTTTTTACACTACGTCATCACTTAGGTACGTCGTTCTTTTTTTACTCTTCGCTATCACTTAGGTACGTCATTCTTTTTTTACACTTCGCTATCACTTAGGTACGTCATTCTTTTTTTACACTTCGCTATCACTTAGGTACGTCGTTCTTTTTTTACACTTCGCTATCACTTAGGTACGTCGTTC
>TU1818080
CGCTATCACTTAGGTACGTCATTCTTTTTTTACACTTCTCTATCACTTAGGTACGTCGTTCTTTTTTTACTCTTCGCTATCACTTAGGTACGTCATTCTTTTTTTACACTTCGCTATCACTTAGGTACGTCATTCTTTTTTTACACTTCGCTATCACTTAGGTACGTCATTCTTTTTTTACACTTCGCTATCACTTAGGTACGTCGTTCTTTTTTTACACTACGTCATCACTTAGGTACGTCGTTCTTTTTTTACACTTCGCTATCACTTAGGTACGTCATTCTTTTTTTACACTTCGCTATCACTTAGGTAAGTCGTTCTTTTTTTACACTTCGCTATCACTTAGGTACGTCATTCTTTTTTTACACTACGTCATCACTTAGGTACGTCGTTCTTTTTTTACACTTCGCTATCACTTAGGTACGTCATTCTTTTTTTACACTTCGCTATCACTTAGGTACGTCGTTCTTTTTTTACACTTCGCTATCACTTAGGTACGTCGTTCTTTTTTTACACTACGTCATCACTTAGGTACGTCGTTCTTTTTTTACACTTCGCTATCACTTAGGTACGTCGTTCTTTTTTTACACTACGTCATCACTTAGGTACGTCGTTCTTTTTTTACACTTCGCTATCACTTAGGTACGTCATTCTTTTTTTACACTTCGCTATCACTTAGGTACGTCGTTCTTTTTTTACACTTCGCTATCACTTAGGTACGTCGTTC
>TU1818081
CGCTATCACTTAGGTACGTCATTCTTTTTTTACACTTCTCTATCACTTAGGTACGTCGTTCTTTTTTTACTCTTCGCTATCACTTAGGTACGTCATTCTTTTTTTACACTTCGCTATCACTTAGGTACGTCATTCTTTTTTTACACTACGTCATCACTTAGGTACGTCGTTCTTTTTTTACTCTTCGCTATCACTTAGGTACGTCATTCTTTTTTTACACTTCGCTATCACTTAGGTACGTCATTCTTTTTTTACACTTCGCTATCACTTAGGTACGTCATTCTTTTTTTACACTTCGCTATCACTTAGGTACGTCGTTCTTTTTTTACACTACGTCATCACTTAGGTACGTCGTTCTTTTTTTACACTTCGCTATCACTTAGGTACGTCATTCTTTTTTTACACTTCGCTATCACTTAGGTAAGTCGTTCTTTTTTTACACTTCGCTATCACTTAGGTACGTCATTCTTTTTTTACACTACGTCATCACTTAGGTACGTCGTTCTTTTTTTACACTTCGCTATCACTTAGGTACGTCATTCTTTTTTTACACTTCGCTATCACTTAGGTACGTCGTTCTTTTTTTACACTTCGCTATCACTTAGGTACGTCGTTCTTTTTTTACACTACGTCATCACTTAGGTACGTCGTTCTTTTTTTACACTTCGCTATCACTTAGGTACGTCGTTCTTTTTTTACACTACGTCATCACTTAGGTACGTCGTTCTTTTTTTACACTTCGCTATCACTTAGGTACGTCATTCTTTTTTTACACTTCGCTATCACTTAGGTACGTCGTTCTTTTTTTACACTTCGCTATCACTTAGGTACGTCGTTC

Function

NR:

description
PREDICTED: extensin-3-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1818078 False 727 lncRNA 0.37 2 8957102 8957976
TU1818079 False 357 lncRNA 0.37 2 8957102 8957976
TU1818080 False 727 lncRNA 0.37 2 8957102 8957976
TU1818081 True 838 lncRNA 0.37 2 8957102 8957976

Neighbor

gene id symbol gene type direction distance location
LOC110518381 LOC106610525 coding upstream 3467 8909460 ~ 8953635 (+)
vwa11 LOC106610525 coding upstream 52444 8875109 ~ 8904658 (+)
LOC118941441 NA coding upstream 132656 8820142 ~ 8824446 (+)
LOC118941440 LOC106577279 coding upstream 155845 8778760 ~ 8802053 (+)
LOC118941438 LOC106610528 coding upstream 216093 8713686 ~ 8741009 (+)
LOC110497233 LOC106602251 coding downstream 2623 8960599 ~ 8981315 (+)
LOC110497235 LOC106610498 coding downstream 26363 8984339 ~ 8994686 (+)
LOC118936441 LOC106610520 coding downstream 51802 9009778 ~ 9015559 (+)
LOC110497247 LOC106610465 coding downstream 69669 9027645 ~ 9033977 (+)
LOC110498615 LOC106602251 coding downstream 94963 9052939 ~ 9064376 (+)
G1587799 NA non-coding upstream 19460 8922260 ~ 8937642 (+)
G1587751 NA non-coding upstream 149158 8806486 ~ 8807944 (+)
G1587741 NA non-coding upstream 221809 8734841 ~ 8735293 (+)
G1587738 NA non-coding upstream 231866 8724863 ~ 8725236 (+)
G1587831 NA non-coding downstream 13461 8971437 ~ 8973548 (+)
G1587814 NA non-coding downstream 77647 9035623 ~ 9037395 (+)
G1587807 NA non-coding downstream 117131 9075107 ~ 9084300 (+)
G1587868 LOC100136185 non-coding downstream 129692 9087668 ~ 9090046 (+)
G1587790 LOC106610525 other upstream 9739 8900986 ~ 8947363 (+)
G1587727 LOC106598223 other upstream 112322 8739544 ~ 8844780 (+)
G1586672 NA other upstream 1900633 7054845 ~ 7056469 (+)
G1586200 NA other upstream 2594790 6361848 ~ 6362312 (+)
G1585983 NA other upstream 2786275 6169580 ~ 6170827 (+)
G1587805 LOC106602251 other downstream 35478 8993454 ~ 9063965 (+)
G1588177 LOC106610450 other downstream 384883 9342859 ~ 9413146 (+)
LOC110514468 LOC106602219 other downstream 465789 9422781 ~ 9425478 (+)
G1588532 LOC106610266 other downstream 853072 9798537 ~ 9814485 (+)
LOC110534552 LOC106602324 other downstream 871480 9829419 ~ 9847684 (+)

Expression


Co-expression Network