G1587831


Basic Information

Item Value
gene id G1587831
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 8971437 ~ 8973548 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1818104
AATAAAAGAAACAAAAACCTTTAATTTAATATTCTGCAAGTTCTGTCAATCAACCTGTCTCAGGATTAGTTTCCAGAGCTTCCCTAGGCCTAGTAAATTTAAACAGTCCTATATTCAAAACATAACTAAATGTTGTTTATTAATTGTCCAACCCAATATTCAAAATAACAGTCCTTAGTGCTTACTTTAACTCAAATTTGaccttctcaattcaattcatcaTCCCTTTAATAATTAACATTTTACTAAAAACTTTtagtaccagtaatatctatTTTACCATGCACCCTTTTACCTCTGTTTTTCTGTCATGAGTGGCCTAGTAATAAAAGGTCATTATCCCAATCCCCTTTAGTCTTTCTTCTCCCAGTACATATCATTCCAGATACAGTTCACAGGTCATCAGACACAGTTGTCCCACACTATTCAGCCAGTAGGGTGGGTTTGAGTTTCACACCCACTTGGTGTTATGATAGTCTCTCCCAAGCATTAATGCAGTCTGACATTACATTTCCATGATAACTCCCTTATTCTACTAGCGATCTCTCAGATGAGTTACAGATTATGTAGTTATCATCATAACCCTTGCAGAAACCCCCACTCCAATAACCTATTTGGAGTAACTGTTATCCCTTGTTTACATATATTTCCATTTTATATGTAGCATGAACAAAGCACATTTTGTATTTACCCAAAGACCATAACCCCAGGGAACTGATATGTTCTCCTATAACCccatgttaaataaaaataaacctaTTTGAATAACTAGTCAATTCAAGATTACAACTCTTCATCTTTTTCCCAAGGAAATAATGGAATTTCAAAGTGATTGTACACTTTGAATAGAGACTGGTGTTTCTCAATCATTTTATAATTAAATCCCACTTGTTCCAACAATTTCTAGTGAAGTTGATCAATCTTCAAGGGAAATTCTTAGGGTTCAGGGCATTTGACACCATTAAAATGTTTCCACTCTCCTTTCTTTAGAAACAAcccaaatacattttcaaaaacatttcCATCCTTCTGCATACCCAATTTGAAACTGAACTGAAAAAACCCTTCCAAAGGAAACCCACTATCGCATATAGGCCAAGAATACACATGAGCCGGCCTCACTTATCCGAAACTCCAGTTATAGCCTTAACCAGATACTAAGATTTTTAGTGGCCAAAATATCTCTAACTGCTTTCCTCAGTACTACAGTTTCCAATGACATTTTGACCAGAGAACATGTAACCCCTTTTTTTCTGGAAAAGAAATGTACATTTCGTTAACATTCACCATGCCACCCTCTAAATCAGCAAGCTAATAGTATTACATATACTAAAATCCCCTTACATTTCCCGAGCATGCGACAGAAGCTCCAGCCATACACAGAACGCACAATTCCCCCCTGCTCGGCCATCTGTATCCTACCCTTAGAAATTGAATACACCCATACTCTACAATTTGCTTTTCTTCTAACTATTTTTACCACGCTTGTGATTTTTCATATACGTTTATTTTCCGTATTTTGACGCTAATAACAACTTCTCCACGCATTTTATCACCACTGAAACCGCCATTTTAATGCAAAACGACTCCGAGTGGGGctatttgtaaattacatcggtACCTTACTATAAGTTAGGTAAAACGTGATCTAGTACGTATTTCATCACATAAACTGTACTCTCTATGAACCACTTTTTGATTAATCAGAGACTATACACCGCTTGGTGAAAACTTCATTCGTACTAACCTTAGAACGATCAGTTGTTGTTCTTTTAAAACGGGTGTAAATTCCTGTATTTCTGCATTCTCTACTATCGCATTCCAGTGTCATCTTACACTAATTTTCCCCCACACTAGTTAGCCCTGCTCTACAACTTCTTACACTTCCCCCATCGTAATGTATTTCTGATGATATAATGTTAATTAACATTAAAACGCTGGTAAGTTAAGCTTCTTGTTATGGTTGTATGTGATCGTTccaattcattattttatttatcctgTTTACCGGGTAATGTTGCCCTACATTGTAGCAAACCGCTCCTTCATATTCAAATCGAATTGGTAGAATTAACGTGCGCTTCTTTCAGCGACTCTATGGCTTTATTAAAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1818104 True 2112 lncRNA 0.36 1 8971437 8973548

Neighbor

gene id symbol gene type direction distance location
LOC110518381 LOC106610525 coding upstream 17802 8909460 ~ 8953635 (+)
vwa11 LOC106610525 coding upstream 66779 8875109 ~ 8904658 (+)
LOC118941441 NA coding upstream 146991 8820142 ~ 8824446 (+)
LOC118941440 LOC106577279 coding upstream 170180 8778760 ~ 8802053 (+)
LOC118941438 LOC106610528 coding upstream 230428 8713686 ~ 8741009 (+)
LOC110497235 LOC106610498 coding downstream 10791 8984339 ~ 8994686 (+)
LOC118936441 LOC106610520 coding downstream 36230 9009778 ~ 9015559 (+)
LOC110497247 LOC106610465 coding downstream 54097 9027645 ~ 9033977 (+)
LOC110498615 LOC106602251 coding downstream 79391 9052939 ~ 9064376 (+)
LOC110497243 LOC106610480 coding downstream 92766 9066314 ~ 9068577 (+)
G1587824 NA non-coding upstream 13461 8957102 ~ 8957976 (+)
G1587799 NA non-coding upstream 33795 8922260 ~ 8937642 (+)
G1587751 NA non-coding upstream 163493 8806486 ~ 8807944 (+)
G1587741 NA non-coding upstream 236144 8734841 ~ 8735293 (+)
LOC110497233 LOC106602251 non-coding downstream 5247 8960599 ~ 8981315 (+)
G1587814 NA non-coding downstream 62075 9035623 ~ 9037395 (+)
G1587807 NA non-coding downstream 101559 9075107 ~ 9084300 (+)
G1587868 LOC100136185 non-coding downstream 114120 9087668 ~ 9090046 (+)
G1587882 NA non-coding downstream 137058 9110606 ~ 9110847 (+)
G1587790 LOC106610525 other upstream 24074 8900986 ~ 8947363 (+)
G1587727 LOC106598223 other upstream 126657 8739544 ~ 8844780 (+)
G1586672 NA other upstream 1914968 7054845 ~ 7056469 (+)
G1586200 NA other upstream 2609125 6361848 ~ 6362312 (+)
G1585983 NA other upstream 2800610 6169580 ~ 6170827 (+)
G1587805 LOC106602251 other downstream 19906 8993454 ~ 9063965 (+)
G1588177 LOC106610450 other downstream 369311 9342859 ~ 9413146 (+)
LOC110514468 LOC106602219 other downstream 450217 9422781 ~ 9425478 (+)
G1588532 LOC106610266 other downstream 837500 9798537 ~ 9814485 (+)
LOC110534552 LOC106602324 other downstream 855908 9829419 ~ 9847684 (+)

Expression


Co-expression Network