G1588532 (LOC106610266)


Basic Information

Item Value
gene id G1588532
gene name LOC106610266
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 9798537 ~ 9814485 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1818994
AGAGGATGTTGGTGCACTGCTGCAGCAGGGAAACGGGGGGCTTGCCCAGGCTGGTGGCCAGCTGCACCCGGAGGAGCTGCTCTTTCTGGGTCAGGTTGTCCTGCAGGGCGTGGGCCAGGGCCACTGCAGCACACCAGTTAGACAGGGAGTCAGCCGAGAACAGGCCCCCACACAGCAGCTGGCCCGCCGAGATGGAGTTggCGTCAATGGTGGAGGGCAGGAGGGTGGCTACGATCTCCCCCTGGCCCTTCTGGTTCTTGTAGAGAAAACACTGGAAGCAGTAGAGAACGGCACAGCGCAGCACGAACGGCTGCCTCTCGTTGACCATGGACATCAGCAGCACCACTATGGCAGGTCTTGGGGGGTTGGAGGGAGCGTTGACAGATGCAAAGTAGTCCTGGTTGATCTGTGAGCCGCGGATCACCTCCGATACAGTGTTGATGGTCTCAGTGAGTATGTCAGCAGGCACGCCAGTGGCCATGAGGATGGTGCAGAGCTGCTGCAGCAGGCCACACTGGTACATTGACTTCTGACAACTACTGGTGGCTCCAGGAGAGTTGACCGGGGAGACCATGACTCGCACCAACTGCAGCATGAGGTGGAGGTTGGTGACCTTCTGGGCGGACCAGCCAGAGTTGTCGTCTCCCACCTCGAACCAGGGCTCAAAACTCCCATTCTCCCTGAATTACATGTAACACCAGGACTGTGGTGTGTCCTACCTGCAGCATGAGGTGGAGGTTGGTGACCTTCTGGGCGGACCAGCCAGAGTTGTCGTCTCCCACCTCGAACCAGGGCTTCATCCTCTGGATGTAGGAGCCCTCCTTGAAGAAGTTCTGGTTGGAGCTGTTGTTCTTCAGCAGGTTGACGAGCAGCAGGAGACAGTCCTCCACTA
>TU1818993
ccaacactttacatgttgagtttatatttttgttctttaTAGTCGAGACCCACGTTACTTCTGGCTTTGTTAATATTCTCAAGTAGGATCCAACATCTTGGGGCATTTCCAACTTCTTTGTCTTTTACGACATTTGGTTGACTGCTGTGCCCCTTAAAACATGACAACCGTGATGACTGGTGCAGATATCAGTAGTTTATTGTATGTTAAGTCCAAACACATTCAAAATGGAAAACTAAAACAAATTTGCTCCATCTgcaacacatttttttgtttctACTAGCAAACAAGTAGAAGGTAAACACAGTAAATTAAGATGGCAACCAACTGACTGCTTAGCGTACCACACTTGCTAAAGCCAGGAAGGAAATCCTATTCCACTGAAAAGAGGACTGGAATGATATACATTTAAATCCACTCTACAGCATTTTTCAACAGTGGAAAAAGTTTACAGCCTTTGCTTTAGGGGGTCCTTTGAAACTTGGGGGTAGAGATGGGGGTTTCACTGAAATTtcagagcaaaaaaaataaaagtacaaATCTGCTCCCAATAAACGTTTTAACACCACTGAGTTTTAAAGCACTGACTTCAGAAAACTAGCCAGAAAGCATGATGGCATTCCACTCGGCTGACTCTCCTCGCCCTTGTTGCCCATTGCAAAAGTAAAATCATGAAACTCACATTATGAGTATATAGGCAACTGTGAAACTTGTCCATATGTGGAAACATGGGGAGGGATGTAGTTCTGCAGTGACCAACAATGGGTTCCTGGAGAAAGGGGCTCAATTTCAAAATGGCCTCTtcccataacacacacaccagtgttcgGCACGTCGCTCCAATCCAACCAAAAGGTACATGCATTTCCACCAGTGTGACTGGCTTTTTAAGCTGGCCCACGCCACGAGAAAATTAATTATGAGAGCAATGTCAGAAAAGGGGGTAGGATGGGAAAAGTGTTTTTACTGTGACAGATTGTCCCAGAATACCACCTGACAAGGAAGACCTCAGTACGACATTTTGGAAAAGGCGCTACATCAGATTTAACTTTCCGTTTCAGTGCAAGAAGACCAGTATAAGAAAAAAGAAGTGCAAAATATTTGTCATTTCTCCTCCCCGATTCTATTCCAGGTTGAAACCGAGGTCTTCCCTTTCACAGTCACAAAAATAAAACTTCCCATTTCACTGGCAGAGTACTGGTATAGAAAtcttatttttcttattttgccttagtggggaaaaaaataatagaaaaatcGGTACACAGCACATTGAATATTatcagcatttaaaaaaatatgaacgcataaatggatttaaaaaagtGAGTGTCATCCCAGATAAAGTTTGCACTAAGGCTAAACCACACCTAAGATTAACATTTTACAAAAATTGCTGCCAACGAAAAATGTTTGTTGTTGATGAAACAGTCGGATGCCCTTGGATCCAGGGCTTATGCCACCGTTCGAGACAAAGACCATGCTGCTCCAATTGACCGTACCGATTGAGAACTGTCTAGTAGCCCATGTCTGAGCCGTGCAATACAACGTTTACCTTTAAGAGGGCATTTCATTTTCACTGTCCGTTACAGTTACTAAGCAAACAGCTCGTCAATACTGCAGATCCAAACTCTTCAACTGATCCCATTTGCTTGACTAACCAAGAATCACATGACTAGTATGTTCCAATGAGTCATTTCTTTAACATAACGCATCTCTGGGACATTTAACATTAAAACTTCAGGCACCCGTTGTCTCTCTAGTCTCTTCAAACCCCAGAGCAGATACTATAAACAAATGCACAACTTGCAGCACATCATCTTAGGTAGTTCAACAGTACTTATGGGAGAGTGAAATGTGCACCAGAATAACGTTATAATCCTGTGAAGAACACTGCAAATTCTCCTGGCCTCAGTAGGTAGAGTAGTTCAACTGGAGCTGGGAGCAACACCGGACACCCCGAACTCAACTCACTAGTAAGACTGGAAAGATGAAATAGAAGGCACCATCATGCTTTTATAGtcaagttgaaaaaaaaaaaagaattaaaTCATACAGTGAACTATGATTTTTGCTGTACATTTATTATGTTCCTCCGTACACTTGacggggaatggagggagaagaggaacccCAGTTTCACGGTTCTGGCAAGGGTaggggagaaaaaaaatgcatgaaaataaaataaaaaacaataggGAGCGAGTCTCCAAACATTATCACCACCACTCTCCTATTGGTCAGCTTGGGTTGTGTCTGTGGACCATCCTTTTATTTCCCCAGTCGGTGAAGTCCAGGAACTTTGAGCTTTTTATTAAATTCATTTAGGAAAATAATCATTCTGTAGATTGGTATGTTGTATTCCAGCAGTAATTGAAGCATAGTTATAGGTTCGCAGATGAAAGATGTGAGAAATATATTGGTCACAGTAAACAGGCCTGAAGTGGAGGCCTGCCTTGTCACGTCGTTTAGCTTTGAGACAACAGTAGATGTCTCAACCAGCTGCGATCCCAGGATGTCAATGTAACATGACAAAAGTACCCATTAGTGCATATTGATGAGTGCATTATGCAATTTGTTTTAAGCAGTGTCCTTTGAAAAGGAAAAAACTAAATGCAAGCCCCCCCACAGCAGGAAATTCACCtcatgcttttccaacagtaacGGGCAGAGAACTCCCACATATAAAATGTGCATTAAGAGGGGTTTCGTGACGTAGCGCCCTGGTAAGTCGAGGCGTAATAATCTCTATTCCAAATGATGGGCTGTATTATCGTAGGTAAAAGTCTATCAGTCCCTCCTCCTATAACGATGCAGATTACTCCTGGTTGCTTTTCCTCAAATTTACAAATTAATGTTTGTGAATTCTTGACAACACTGGAAAAGTACGCTCAGCTCACAGCTAAGTAAAGCGAAAATGCAAATTTGACGTTTGCTCATTTTTGTCTGTCACATCAAAGAAGAAATAGTTGACAGTCTGTCACATTCCAAAGCCAAAAATACGTTTTTACCGAAacgaaaataaacaaacaaaagtaTATACGTTTATACATGTAGATTTTTTCGTTAACGAGAACGGTAGAAGATGAAGAACGTGGTACTACTTCCGAACTGCAGGTGGCACTATCAGCGGCGCTGGGTGGTGAAGCGGCCCTCGGCGgatcctcctgctcctcttccaGAGCCCAGACCGGGCTTGGGAGCACCCATGCCGCCCCTGGGTGGTGGGCCCCTGCCGTCACGCATCATCCCGCTGCCGGCTACCATGCCTCCTCGCGGGCCGCCGGGCCCCCTGTCGCCACGTCTCCCCATGTCTCTGCGGTCGTCTCCGCCACGGACCTCCCGCTCACGCACCGCCCTGGTCTTCTTCTCCTCTACGTTCAGACGCACCTCGCCACGGAACATg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1818994 False 892 lncRNA 0.59 5 9798537 9800170
TU1818993 True 3409 TUCP 0.42 2 9811048 9814485

Neighbor

gene id symbol gene type direction distance location
LOC118941544 LOC106595224 coding upstream 72752 9723887 ~ 9725785 (+)
LOC118941452 LOC106602212 coding upstream 321555 9469953 ~ 9476982 (+)
LOC110533187 LOC106610415 coding upstream 368917 9428321 ~ 9429620 (+)
LOC110514468 LOC106602219 coding upstream 373059 9422781 ~ 9425478 (+)
LOC118941451 LOC106610450 coding upstream 385303 9412207 ~ 9413234 (+)
LOC110534552 LOC106602324 coding downstream 29249 9829419 ~ 9847684 (+)
LOC110498632 LOC106602317 coding downstream 81088 9881258 ~ 9893776 (+)
LOC118941454 NA coding downstream 95448 9895618 ~ 9901752 (+)
LOC110498455 LOC106593843 coding downstream 104813 9904983 ~ 9916062 (+)
LOC110514020 LOC106610285 coding downstream 117155 9917325 ~ 9929612 (+)
G1588449 NA non-coding upstream 162679 9635578 ~ 9635858 (+)
G1588438 NA non-coding upstream 171207 9627066 ~ 9627330 (+)
G1588221 LOC106610435 non-coding upstream 314820 9477134 ~ 9483717 (+)
G1588214 NA non-coding upstream 335806 9462214 ~ 9462731 (+)
G1588212 NA non-coding upstream 339592 9457402 ~ 9458945 (+)
G1588620 NA non-coding downstream 232767 10032937 ~ 10033301 (+)
G1588639 LOC106610245 non-coding downstream 261062 10061232 ~ 10090086 (+)
G1588654 NA non-coding downstream 283164 10083334 ~ 10084879 (+)
G1588660 NA non-coding downstream 299083 10099253 ~ 10099794 (+)
G1588663 LOC106610245 non-coding downstream 303053 10103223 ~ 10119553 (+)
G1588177 LOC106610450 other upstream 385391 9342859 ~ 9413146 (+)
G1587805 LOC106602251 other upstream 734572 8993454 ~ 9063965 (+)
G1587790 LOC106610525 other upstream 851174 8900986 ~ 8947363 (+)
G1587727 LOC106598223 other upstream 953757 8739544 ~ 8844780 (+)
G1588532 LOC106610266 other downstream 10878 9798537 ~ 9814485 (+)
G1588675 NA other downstream 332721 10132891 ~ 10135488 (+)
G1588690 LOC106610250 other downstream 367306 10167476 ~ 10169449 (+)
G1589189 NA other downstream 762764 10562934 ~ 10568998 (+)
G1589200 NA other downstream 772653 10587138 ~ 10587565 (+)

Expression


Co-expression Network