G1590588 (LOC106610223)


Basic Information

Item Value
gene id G1590588
gene name LOC106610223
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 11526689 ~ 11528570 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1821366
AGTCGGGGTGGGTTATGCAATGTCAGCTTGAGAGGCCTGGGAGAGGGCATGGGCTTCTCCTTAAGAGACACTAAACATGAGGCAGTCTGGCCTCAagtaccttgtgtgtgtgtgtgtacctgtttgaggtgTTCACTGAGGACGATGCGGAGGCTGCCGTTCCTGTGGTTGAGCATCTCACAGGTCATCAGAGTGTAGAACACGGCCGTACACATCAGAGGAACGCAGAAGTAGAACCCAAACAACCACCAGTCCTTGATGTTCTTATAGTACATCATGAACTCAGTCTTGGGGTTGAGCATGCATGTCCGTATGGTCTCGTTCCTGTAGTTGAATTCAACCATGTCGAAGCCGATGGCCTCTGGGACAGCCAGGACCATGGACAGCACCCAGATGGACACGATCTCCATGGCCGTCCGAAGAGGAATGCCTACTCCCTGGACCCTGCTCCATGACGCCACTGCACGGTACCTGGGACATAGAGGGACACAAAGAATGAAAGGGTGGGGTAAGGTAGGGGTTAGAGCAGAGCCAGGGCTGTGGACCTTTCAGCAACAACTGCTGAGTTGGAACTAATAAACAGCCCAGCGGCGAAACTAGTTGTAATGAAGTCATTTCAACCAGCTTTTAATGGTTGTAATGAAGTCATTTCAACC

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1821366 True 656 lncRNA 0.51 2 11526689 11528570
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110497368 LOC106610221 coding downstream 314563 11115879 ~ 11212126 (-)
LOC110498648 hhip coding downstream 561971 10915252 ~ 10964718 (-)
LOC110497364 LOC106610217 coding downstream 629411 10879787 ~ 10897278 (-)
LOC110497363 LOC106610230 coding downstream 661706 10832619 ~ 10864983 (-)
LOC110498645 frem3 coding downstream 715240 10759730 ~ 10811449 (-)
LOC118941455 NA coding upstream 3694 11532264 ~ 11542073 (-)
LOC110497372 prmt9 coding upstream 19835 11548405 ~ 11562995 (-)
mra mra coding upstream 115987 11644557 ~ 11742079 (-)
LOC110497375 LOC106610178 coding upstream 404450 11933020 ~ 12261321 (-)
sh3d19 LOC106610182 coding upstream 748973 12277543 ~ 12301126 (-)
G1590640 NA non-coding downstream 9052 11517421 ~ 11517637 (-)
G1590633 NA non-coding downstream 20238 11506199 ~ 11506451 (-)
G1590626 NA non-coding downstream 34092 11492334 ~ 11492597 (-)
G1590622 NA non-coding downstream 36925 11489518 ~ 11489764 (-)
G1590620 NA non-coding downstream 39294 11487190 ~ 11487395 (-)
G1590582 NA non-coding upstream 1622 11530192 ~ 11532245 (-)
G1590703 NA non-coding upstream 103927 11632497 ~ 11632809 (-)
G1590579 NA non-coding upstream 108732 11637302 ~ 11641225 (-)
G1590706 NA non-coding upstream 124449 11653019 ~ 11653467 (-)
G1590709 NA non-coding upstream 129296 11657866 ~ 11658187 (-)
G1590098 LOC106577701 other downstream 255871 11270516 ~ 11270818 (-)
LOC110498432 NA other downstream 1381120 10134147 ~ 10145900 (-)
LOC118941443 NA other downstream 2558385 8965525 ~ 8971363 (-)
G1588003 LOC106610497 other downstream 2573013 8902855 ~ 8953676 (-)
G1590583 NA other upstream 112837 11641407 ~ 11641866 (-)
G1591322 NA other upstream 723221 12251791 ~ 12252528 (-)
LOC110497387 LOC106602387 other upstream 1697599 13226169 ~ 13239221 (-)
G1593032 spcs3 other upstream 2296989 13825559 ~ 13829469 (-)

Expression

G1590588(LOC106610223) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 3.
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G1590588(LOC106610223) Expression in each Bioproject

Bar chart with 14 bars.
G1590588(LOC106610223) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 12.
End of interactive chart.

Co-expression Network