G1590582


Basic Information

Item Value
gene id G1590582
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 11530192 ~ 11532245 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1821360
CTTAAATGATTTTTATTAGGATAAGCAGCAGCATTTCTGTATGAAACATGAGAAACAAATGTGTCGAACAATAGTACAATTTCCTATCGAGGGGTATGATGCCTCTGAATGAACAGTATAGTGGTAAGATACCATGTATTGATATGAGTGGTTAAACTGAAAAGCCTTTATCTTTGACACTGTCTGATATGCTGTAGATAGTGccacaaacactcaaacaggaaAAAGTGcaaaaaaatcacacacacacacacacacacacacacacacacagcacacacagcacatTAATTGTATTCATAATACATGTATTCACATATCAAATGTATAAAGCAGTATAGTCACCTAGGTAGCTGATATGAGTTAAACACCAACTGGTATATTTATCatcacaaaaacaaacaaaaaaacgaaaagaaaaaaaaaatcctgccTCAGGCAAAGGACAAATGATAACCACATTCTGTATATATGATGAAGAACATAGCAAAATATAAAACCATATAAAACTTGATATATACGAGCATGTTTCACAAACAGCTTAGCTGTAAATACCAACATTTTCTGTGTCATGTAAAATTCACAGTGAAGTAGGGAAAACGTTTTtatccctttattttttggggtGAGAACATAGAGGCCCCCTTTTCAACGAGCCTTGAACTGAGACATAATCATAACGTTGTACTTTATGGTCCTGTGGTGCTTGCTGCACCTGGACTTGTTCTTTAAACTAGCTTGGGACTTCAGTAGGGGTCAGAAAACCATTAGTCTTTGGATAACAAGTCAAGAGACTgggtctgcttcccaaatggcacccccttccctcctatagtgcactacttttgaccagggagcataggactatgtagggaataggggtccatttgggatgcactctgGTAACTCTACACTGGAGTAACTCTACACCCTAAGTGATATTCCAATGGTTGTTGTACAGAGTCTGTATGCTGTATAAGGCTATACGGGGGAATTCAAGGTGACACAAGGCACCTTCTCGTTAAAATCACTTTTTCCTTCTTCCCAGCACGTGAAACCTAAACACAGTGAATTAACACTTCCTGGTACGTTTTATAAAACAGAATTTAAAActgtactggaacacacacacacgtgtacatgGCAAAATCACTTTCATCTATATTAAAACAAATTCACCATACAGAACACAGGACATTCGCTTACTCTATGAAAGTGTACTGCTGTGTATACAACGACCAGCGTATAGTGCCTATGATGGAAGATGCTATAGCGACACTTAAAAAGGACAGTCAACTCAATAGTGCGAGCTCCCCTTCCCTCCGCCATCACTGAGTAGCAGTTCATTAGGACTCATGGGGGAccattctctccttctcctctcgtCCCCTTCTAACAGGGAGCGCTCTGGCCTTCCTTCCCGGGGTTTCTGCTGCTTCCTGGTTCGTCCCAGCAGTGCTGACCGTTTTGTGAACAGAACAACACGCTACTCGCTCCTGACTGGCCGGTCATTTATAGCCTGGGTTCAGCTGCATCCTGTTAGCTACCTTCCtccatccctcttccccctctcttacGGTACTGTAAAGCATCGCTCCCTCCTCGTCTCTCCCTGGCAAAAGGAATGGTATAGTCCGTAGAGACACTGGAAATACTGCAGTGTCCATCATGCCCATTGTATGTTTGTGTCTATATATAAACTCTAACACTAATTTTCCCCGTCGTTCTACGTCAGGCTCCAGAGCTGCCCAGCAGTGTTCTGTATAAGAAACGTGTGGTGGTGTTTGAAACATGTGACTCTCCTATTGAGCTGAGAGTCCGTTGTGTTTAGTGCAGACTGGCTGTAGTTGTAGTGAGACCTCCTCGTCCATAGGGGGCGTCACCTCCTGTGGTGGTCAGTCACTATCCTTGCGTAGGCTGCGGTCCGTGTGAAGGTTGACGGGCTCTGGGCTCTTGCACTGGATACTGGTCCCGTTCCCGTTTTGTCCCGTGCTGGTCACTGTGGCATCCGAGTGGCACCAGCAACACAGGC

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1821360 True 2032 lncRNA 0.44 2 11530192 11532245
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110497368 LOC106610221 coding downstream 318066 11115879 ~ 11212126 (-)
LOC110498648 hhip coding downstream 565474 10915252 ~ 10964718 (-)
LOC110497364 LOC106610217 coding downstream 632914 10879787 ~ 10897278 (-)
LOC110497363 LOC106610230 coding downstream 665209 10832619 ~ 10864983 (-)
LOC110498645 frem3 coding downstream 718743 10759730 ~ 10811449 (-)
LOC118941455 NA coding upstream 19 11532264 ~ 11542073 (-)
LOC110497372 prmt9 coding upstream 16160 11548405 ~ 11562995 (-)
mra mra coding upstream 112312 11644557 ~ 11742079 (-)
LOC110497375 LOC106610178 coding upstream 400775 11933020 ~ 12261321 (-)
sh3d19 LOC106610182 coding upstream 745298 12277543 ~ 12301126 (-)
G1590588 LOC106610223 non-coding downstream 1622 11526689 ~ 11528570 (-)
G1590640 NA non-coding downstream 12555 11517421 ~ 11517637 (-)
G1590633 NA non-coding downstream 23741 11506199 ~ 11506451 (-)
G1590626 NA non-coding downstream 37595 11492334 ~ 11492597 (-)
G1590622 NA non-coding downstream 40428 11489518 ~ 11489764 (-)
G1590703 NA non-coding upstream 100252 11632497 ~ 11632809 (-)
G1590579 NA non-coding upstream 105057 11637302 ~ 11641225 (-)
G1590706 NA non-coding upstream 120774 11653019 ~ 11653467 (-)
G1590709 NA non-coding upstream 125621 11657866 ~ 11658187 (-)
G1590712 NA non-coding upstream 131919 11664164 ~ 11664363 (-)
G1590098 LOC106577701 other downstream 259374 11270516 ~ 11270818 (-)
LOC110498432 NA other downstream 1384623 10134147 ~ 10145900 (-)
LOC118941443 NA other downstream 2561888 8965525 ~ 8971363 (-)
G1588003 LOC106610497 other downstream 2576516 8902855 ~ 8953676 (-)
G1590583 NA other upstream 109162 11641407 ~ 11641866 (-)
G1591322 NA other upstream 719546 12251791 ~ 12252528 (-)
LOC110497387 LOC106602387 other upstream 1693924 13226169 ~ 13239221 (-)
G1593032 spcs3 other upstream 2293314 13825559 ~ 13829469 (-)

Expression

G1590582 Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 10.
End of interactive chart.

G1590582 Expression in each Bioproject

Bar chart with 18 bars.
G1590582 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 60.
End of interactive chart.

Co-expression Network