G1590579


Basic Information

Item Value
gene id G1590579
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 11637302 ~ 11641225 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1821355
gggggccgaatactttcgcaaggcactgtacaataaCCTTCAAACATACTGTATGGCGTTGATATTGGAACTGGATGTTGGAAAATGCCATTACTCTACAGTCACAGTGCTTTCAGTAAATGCATAATGTATTCAAATGTACCTGGCAAGCAGCAAATACATACAGTAAATGCAATGGCACTTGCTTAGGTTACAGTCACATTTCCCCCACTGTTGTACAGAAACTGTTTTGGAAGTACATGTTGATACTGCTGATAAATGATTGACTCATTGCATTGGCCACCTGTCCTGATTTTGTGTTGTCCATCTTGTCTTTGGGCCAACTCTAGATGTATGGCCAGTCATCTGGACCATTcttaccagacctgggttcaaacatgATTCAAAACCTTTCAAACTACTTTGAGCGTTTGCTTTAGTCTGCCGGGACTGTCAGGTGGGTGGGGTTTGCATTTTTTGGGACATTTCAATTGGTTCTATTGCAAAAGTCAAGCTCAATTAAGTACAGCTAAAGAATTTGAAACCATTTCAAATAgtacttgaacccaggtcttATTCTTACTAGTTTCACACCAGATTGACTGACTGCTTAACCATTGTGGAACACTATGATGCTACTGAATAGCGTGAGAGATAGAGTCGTTTGAGAGGAAAAACAGAGGGGGCGCGTTTGGTTCCATCGTTTCACCTCgtttgtgagtgagtgtgtgtggttgtttgtttTTTCCCCTGGCAAGCACGAGCATAATTGATCTTCTTTTTTCGAGGGCATTGTTAGTTTTCCTACGTTCTATAGGATTATGCTGAATATCCTAATTGCCTGAATTAGATTTGTACAGAAGAGATGTGACAATTGAGGCATTAACCCAACTAGAACATTGTGTGTCTGGTTGATAACTAAATGTGAATAAAAATGGGGAGACCCTGCATGAATAAGGCCTATAGTTTAAAGAGATAGTTCACTTCAAAATGTGAACTCCCCCTTTAAGGTGCTGTTGGTGTTTCACTATAGGTTCTACTTTGTAGGAAGCTGTCCAGTGTTGGACATAGAGAACAGACAATGGCAGGAGGATCACGATTAAAGAAAAAGCCAGTCCCTATGCTTAAACGGTCTCATTTTGCAGACTGTCCATCCATGTCCCTTTTGTACATTGCTGTGTTGAAGTTGTGAACTGAAGGACCCTAAAGACACGCTGTAAAGAACTGCTATTATTTTTCTTCTTGTTTtgctcctctaccctctcctttttattttttaaaaatagtGTCAAAAAAGGTTCATAGGACGAATGGGAAAAGTATTTTTGAAAGAATTATATTTTGCTGGAAACAATATTTAAGTACTTtgtctaaaaataaaaaacataacttTTTTTGTAAAGTGAAATGTTTATGCATGCTTTTTTTGATGAGATGTTTACATTGTATTTAAGAAGGGAAAATTGTGCCTTTTTATCTCACCTGATTTAACATTTTACAGTATATATTGTAAATAATAAAGAAAGTAATTATGTTTGAGTAGTGTAAAAAACATTTATACTTTAAAGGAATAATCCGgtcaaaaactatattttggtattggtttcattagtccactgttaatagtgtaaaaaaattaaataaactaCTTCatcagtcaagttttcaagatgtaGGATTTTCAAGAAGCAAATGCTGTCGTGGGTGTGGGGGGTAATTTTCAACTCGGAattcaactcggaattccaagtcggaaactctggcatatttctagagctccgactttctaACCCTGAAGATCTCTGACATGATTTTACCCCGTTTtttttgtcttgaaagcaccaaagTTGCACTTTGCTTATTGAAAAACAtacatcttgaaaacttgactgctgacatgcaaaaacATTGAGACTGTATCAACAGGGGATTAATgaaacaaattaaatatattgtttTTGAGTGGATTATTCCTTTAACTTACATCTTGTTGGAATATCTGCAGTTCATGCGGCTCCCACTTGTTATGTTGTCGTTTTGGATCATAGAAAGAAATGGCACAAGGTTCACACGATAAAGCTAGCCtgctcccagatctgtttgtgcagtATTGTCAACTCTTGCCAGTCATTGTGATGCCAAACATGATAACGATTggcaggagttggcaagacagcacaaacagatctgggaccaggctacaaaaAAGCCAACGGGTTAGAGTGAGTTATGAAAGTACCAAACATTGTGACAGACACTTTACTACCTGAATGTTAGAGAAAGAAATGtcctctttttttcttcttccgtTACAAATAATGTTAACTGTTTATCTGACATTGTTTTGTACTTTTATTTTGCATTTTATGTCAatgtgacttaaaaaaaaaagtaggcaAACATATGTAATTTCTTTGTTACAGAGAGTAGACAGTACCAAACTATGGATCAATGAGTTCTTGCTGTTGACATGATCATCTCCCAACCCCCTTGGCGATATGTGATTTAATAGCACCACACAAATCAAGCAATCAAAAAAAAAGATTAAAGCTGAAATACTGTAGGTTGAAAATACTCTTGCCTCTTCAGTTTGTTCAGCTATTAAGGTTCCAACTCAGATACATTGTGAAAGACAGGTTGATGTGGTCACCACAATTGGGATTCATTTTACTACACTTCCAATCCATTTAGGAAATAATCTGGACATTCCATTTGAATTGGAGGAAAAGGCTCATTGGGGTATAACTCTTGGATTGACTGAAAGTCTGACACCTAAATGGATTTGACTCCAATACTGGTGATAATATAGAACCCAAACCGTGCTACCCTGGGATTTCTAGAAACAACCATTTGTATCATTGAGATCTGGATGCATCATGACTGTTCACAGGTTTAGTTGGCTTGGTCTCAGGTTTTGCAGTGCTCCCAATGGAAGTTCTACTGTATATGGCTTACTGCCTTGCTCAGAAATAAGTTAGTGGTTATCTGCTCATCCTTCTACAGTACAACACTATGCATGTGTACAAAGGGATTTCCGACCACCATCTCATTTACAGTATGCATATAGAATAACAAATGAGGACTTTCAATTCCGATATATTCTAAACAAAAAAGCTTATTACTCATATTTTACAGCATTCATTTATCTCTGTGCAAGGACATGGATGTACAGTaaactccaaaagtattgggacagtgacacatttgttgttttggctcagTATTTCAGCACTCTGGATTTGAAATGATGCAATGACTATGAGATGTTAAAGTGTATCATTATGCTAggatatgggaccaaatactgaacTTTAGACTATTTTAttacacaagtgaatttgtccgagtacttttggtcccctaaaatggggggggggggactacgtacaaaaagtgctgtcctttctaaacggttcacccgataaggatgaaaataccctcaaattaaagctgacagtctgctcTTTAACCTCCAGTCATTGTATCATATCAAATCCAacgtgctggagtacagagccaaaacaaccagCAATGTGTCACTGTCCTAATACTTTGTGCTCACTATGTAGCTTACCATCGATTTCTGTCCTACTTCACCAATTATTTGACGGTTACAGTTGTAATGGAGCCACAgcattcacatttttttttaacaaacatTAACCCCGTATATTGAGACTAAGCCATATCCCCAAAGCCACATCCCCAAAGCCACATCCAAGCTCAGCATTTCCTATTAATAGCACCTGGTTTGTTTTTATCCCAAAATAAATTTTTAATCCAATGCTTTGTACAATATTTGTCAGCAACTATCCACAGTACATGAATATCCTTCAGCGTGAATAAAAACTAGTTCCTACTACAAACTGTATATCTTGAAGCAGATATTTGCCATAACTGTGTTTGCAAAACTATCAAGAGATTCCAATAAAACCGTTAACAAAT

Function

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU1821355 True 3924 lncRNA 0.37 1 11637302 11641225
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110497372 prmt9 coding downstream 74307 11548405 ~ 11562995 (-)
LOC118941455 NA coding downstream 95229 11532264 ~ 11542073 (-)
LOC110497368 LOC106610221 coding downstream 425176 11115879 ~ 11212126 (-)
LOC110498648 hhip coding downstream 672584 10915252 ~ 10964718 (-)
LOC110497364 LOC106610217 coding downstream 740024 10879787 ~ 10897278 (-)
mra mra coding upstream 3332 11644557 ~ 11742079 (-)
LOC110497375 LOC106610178 coding upstream 291795 11933020 ~ 12261321 (-)
sh3d19 LOC106610182 coding upstream 636318 12277543 ~ 12301126 (-)
LOC110497381 gatb coding upstream 703713 12344938 ~ 12363994 (-)
fbxw7 fbxw7 coding upstream 885538 12526763 ~ 12624575 (-)
G1590703 NA non-coding downstream 4493 11632497 ~ 11632809 (-)
G1590582 NA non-coding downstream 105057 11530192 ~ 11532245 (-)
G1590588 LOC106610223 non-coding downstream 108732 11526689 ~ 11528570 (-)
G1590640 NA non-coding downstream 119665 11517421 ~ 11517637 (-)
G1590633 NA non-coding downstream 130851 11506199 ~ 11506451 (-)
G1590706 NA non-coding upstream 11794 11653019 ~ 11653467 (-)
G1590709 NA non-coding upstream 16641 11657866 ~ 11658187 (-)
G1590712 NA non-coding upstream 22939 11664164 ~ 11664363 (-)
G1590719 NA non-coding upstream 33905 11675130 ~ 11675357 (-)
G1590721 NA non-coding upstream 35939 11677164 ~ 11677513 (-)
G1590098 LOC106577701 other downstream 366484 11270516 ~ 11270818 (-)
LOC110498432 NA other downstream 1491733 10134147 ~ 10145900 (-)
LOC118941443 NA other downstream 2668998 8965525 ~ 8971363 (-)
G1588003 LOC106610497 other downstream 2683626 8902855 ~ 8953676 (-)
G1590583 NA other upstream 182 11641407 ~ 11641866 (-)
G1591322 NA other upstream 610566 12251791 ~ 12252528 (-)
LOC110497387 LOC106602387 other upstream 1584944 13226169 ~ 13239221 (-)
G1593032 spcs3 other upstream 2184334 13825559 ~ 13829469 (-)

Expression

G1590579 Expression in all Baseline Samples

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G1590579 Expression in each Bioproject

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G1590579 Expression in each Sample
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The chart has 1 Y axis displaying Expression. Range: 0 to 400.
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Co-expression Network