XLOC_003527 (rpgrb)


Basic Information

Item Value
gene id XLOC_003527
gene name rpgrb
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 29770966 ~ 29790222 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00006897
GTCTGCAGAGATGGCTGGAGAAACAGAAGATGAAATCCCCGagtCCGGAGCTGTCTTCACTTTTGGAAAGAGTAAATTTGCAGACAACGCCCCTAGTAAATTCTGGTTAAAAAATGATGTACCTTTGCGAATTTCCTGTGGAGATGAGCACACAGCACTAGTCACAGagaaTGGGAAGCTGTTTATGTTTGGCAGCAATAACTGGGGACAGCTGGGCCTCGGAACAAAGACCACTGTGAATAAACCCACTTGTGTAAAAGCTCTGAAGTCAGAGAGGGTGAAGCTCACAGCCTGTGGAAGAACTCACACACTTGTTTTTACATCTCGTGGTAACCTGTATGCCTGTGGAGGGAATAATGAAGGACAGCTCGGCCTTGGCGACTGTAATGACAGAACATCCTTTCACCTGGTCGAATTCTTCAACAAACAAGGACCAATCAAAATGCTCGCTGCTGGTTCCAATACATCTGCTGCCTTGACACAGGACGGTAGGCTCTACATGTGGGGTGATAACTCTGAGGGCCAGATTGGATTGGGAAAAGAAAGTAATGCACTGACTCCTCAGGAGGTTTCTGTGGGGAAACGAGTCTTCTGGGTGTCCTGTGGATATTATCATTCTGCCTTTGTTACCGTGGACGGGGCCTTGTACACTTTTGGTGAAAAAGACAGTGGGAAGCTGGGCTTATCGACAGAGAAGCTGGCCAATCATAAAGTGCCTCAACAGGTGACTGACATCCCTGATAGGGTGGTCCAGGTGGCCTGTGGAGGAGGGCACACGGTGGCGCTTACAGAGAATGAGGTGTATTCTTTTGGCCTGGGTCAGTTTGGACAACTCGGTCACGGCACCTTCATATTCGAGTCTCGCTTGCCCAGAGTGGTTGAGCATTTCAGGAAGGGCAGAGTTAAACATGCGGCATGTGGAGAGAACCATACTGCGCTGATTACAGACAATGGCCTTTTGTACACTTTTGGTGATGGTCGGCATGGAAAACTGGGGCTTGGAGAGGAAAACTTCACCAACCAGTTCAAACCAACGTTGTGTCCGAGATTTCTTGACTACCACGTACATTCTGTTACTTGTGGTGGGTGTCACATGCTTGTTTTGGCAAAGCCCAGAACTGAAAGACCAGATGACTTAATCTTAGAGGAGGATGACGTCACTGAAGACTACCTTGAGAAGTCTTATACTGAATTACTGGGGGACACACACAGTCAGACCACCCTAAACAGGAGTCTCTCAGCTCGGGTCAGACGCAGAGAAAGGGAACGTTCACCAGATCAGTTTGGACAGATGTTTCGAACACTTCCAGCACTGAGTGGGAATCAGAGTGCATCTCTATCTGTTCCCAGCCAGATACGTCCCTCCAGCAAGCAACTTGGAAAGATTCCTCACAATAGCCTTAAAACTCCTGGAATTAGAGCGAAGTCTTTTGATGACAGAAGCAGTGTGGAGGATAGCGAGAGTGTAAAAGACCTTGGAGAAACCACTGACTTATTAAACCTGACTCACATAATGAAGATGGACCCTAGCGATAATACACTTACATTGTCTCCCATGGAGAAGAAGAAGGTTAAAGTTGTGAAAGAACACGGTAAGGAGAAGGGGAAGCCAAGGGATGAACCCACCCCTTATAGTAAGAGGGCGGAGCTTTTATCTCGCAAAGCTCTGCCCACTGAGTTACTTAGAAGCTCGAGTGGTAGCTCAGTAGTCGGGGACAGCCGTGGGTTAGGGACACCCCACAAGAGTCCTAAAAGACGTGGTCATGATAAGGAAAATGTACTTATTGCTTTGGAGGGGAGAAAGCCTGGAAGCAAAACTGGAAAGGGAATGGACAAAAGCAGAGCTGGATCCAAATCCTTAAAACTTAAACACACAGAACTGATGGAGTCATCAGATAAAGTGAAAAAACAATCAACTGAAAAAACGCAACAAAATCAAGAAGTAGAAGTCCAAAGGTCCAAAGGAACCTCAAAACCAACCCAAGAGGGAACAGGTAAAGCAAAAGCCAAAGATCACCAGTTGGAAGTCAAAAGCCAGCTGCAAAATGTTGCAGGGAAAGAAAAAGGAGTAAAAAGTAAACCCATAATTATTGTTGAACAACATATCGACCAAGACTTAACAAGTAAGAACTCAAAAGAGGTTTTACCAAAAGTTCAGAAAGTGAAAGGTGACACTAAGATAGCCGAgactgaaaacaaaagttttgtccCACAGAGCAAAAAGTCTGGATCTGAAAAAGACTTAAAAAGTAGCAAGACAACAAAAGAGATCTCCACTACTTCACATCCAACTTCCGGTAAAGATACTTCAGCAAAGACAAAGAAATCGAGAGCAGAACAACGCCAAGTAGAAGAcaaattaaaaaagacaaaaatggtGCCTACTGTTGTCTCAGAGGCAGCTTCTGTATCTGAGTCTGCATTAGAATCAGAGGAAAATCAAATGAAGGACAATCCTCTCACCAAGGTGACTTCTTTACTCCAAGGTATGGGAATGGGAGGCTCTGCTCTTTTAGTTGGAGAAGCAGTGGCCAGTCAGTTACTTTCCCAGTCCACACCTCAAGAGATGCCAAAACCCCTTTCAAGACAGAGAACCCTTTCTGATGTTTCATCCCTGAGTGAATCCTATGACGTTTCAGGGCAAGAGGAGGCAAGAGAGGCCGAGAGGACGGCTGTCACCATCAACGTTAAGGCAGATCCAGATACTTCAGATAGGGACACGGAAAGAAGCAGATCTGAGTCCAAAACCGACGCTCATTCTGAGATGGGAACATATAATAGAAAGGAAGAGGAATCAGATGAGGAGGAAAGTGAGGGTTCAGTAAACGAAAGAGATGAAACTGAAGATGTGGAGGAAAGTGATGGACTGGGGAACAGAAGGGATAAAAGTGAAGAAGTAGAAGATAGTGATAGCAAGACACATGACAAAGTAGGGGAAAATGATGATGATTCTGAgggtgatgaagatgatgatacaATGATCAAAGATTCTAGTGAGGAAGAGGAAAGTGAAGAGGAGAAGACAGTTAATGATACAGTGACCAAAGCTTCTAGTGAGAATGAGGAACGTGAGGAAGAGGAGAAAAGTAACGATTCTGAGGTTAATGATACAATGACCAAACATTCTAGTGAGGatgaagagaaagaaaaagaggagaaAAGTAGTGACTCTTCCAATGCTTCTAGTGAGgatgaagaagaagaggaaaaaaaTGGTGATTCTGCCAAAGCTTCTAGTGAagatgaagaagaggaggagaaaagTGGTAGTTCTGTCAAAGCTTCTAgtgaagatgaagaagaagaggaggagaatgGTGATTCTTTCAAAGCTTCTAGCAAGGAAGAAAGTGGTGATTCTGCTAACGCCTCTAATGTGAACAGTGAGGAAGAGGAGCAGAAAAGTAAAAGTGAGGCAACTGATGATTTAGAGAGTGAGGAGGAAGAGGACAATGAAGataatgaagaagaaaaaagtgaGACAAGTGCAAGTACTGAAGATGAGAGCAATGATGATGAGGACAAAAGCGAAACAAGTCAAGAGGAGGAGAGTGGAGAAGAATCTGAAGGAAACTCAGAGAGCAGAAGTGAGAGGTCTgaggaagatgatgaagatgaggagtCGGAGAAGGAAGAAAGTGAGGTGGAAAGTGAAGCAGAGGAAGATGAAACTGGGGAAAATACTAGTGAAGAAGACGATGAGGAGCAGGAAAGTTCATCTGAAGATGAAGAGAAGAGTGAAAGTGAAGCTGAGGGGGAAGAAGAGGAGAGTGAAGGAGACCAAGAGGATGAAAGTGATGAGGAAACAAGTGATAAAGATGAGGAAGAAGAGGAGAGTGAAAAtgaagaggaagaagaggaggagagcaaagttgaagaggaggaggaagaaagtAATGAGGAGGAAGAAAATGAAGAAGAGGAAGCAGAGGAGGAAGAGCCTGGAGAGGATACAGAAGAAGCAGAGGATGAGGAGGGAGAAGAGGAGGACACACAAGAAGAAGAGCAAGAAAATGgcgatgatgaagaggaggaggaggaggaggaggaagaaaaagaaaagaccaaaacaaaacgTGAAAAAGCCTCTAGCAGACTCCAAAAGGACGCCGCCAAACCAAAGCCAAGTGTGAAAACTCACAAACCAAAAGCCAAACAAGCCCGTGCACAAAGCGACCAATCAGATGACGAGTCCCATGAGTCTAAGCAGTTTTGGGATGATGTTTTACCTCAATACcttaatttaaaataactcaAC
>TCONS_00006898
GTCTGCAGAGATGGCTGGAGAAACAGAAGATGAAATCCCCGagtCCGGAGCTGTCTTCACTTTTGGAAAGAGTAAATTTGCAGACAACGCCCCTAGTAAATTCTGGTTAAAAAATGATGTACCTTTGCGAATTTCCTGTGGAGATGAGCACACAGCACTAGTCACAGagaaTGGGAAGCTGTTTATGTTTGGCAGCAATAACTGGGGACAGCTGGGCCTCGGAACAAAGACCACTGTGAATAAACCCACTTGTGTAAAAGCTCTGAAGTCAGAGAGGGTGAAGCTCACAGCCTGTGGAAGAACTCACACACTTGTTTTTACATCTCGTGGTAACCTGTATGCCTGTGGAGGGAATAATGAAGGACAGCTCGGCCTTGGCGACTGTAATGACAGAACATCCTTTCACCTGGTCGAATTCTTCAACAAACAAGGACCAATCAAAATGCTCGCTGCTGGTTCCAATACATCTGCTGCCTTGACACAGGACGGTAGGCTCTACATGTGGGGTGATAACTCTGAGGGCCAGATTGGATTGGGAAAAGAAAGTAATGCACTGACTCCTCAGGAGGTTTCTGTGGGGAAACGAGTCTTCTGGGTGTCCTGTGGATATTATCATTCTGCCTTTGTTACCGTGGACGGGGCCTTGTACACTTTTGGTGAAAAAGACAGTGGGAAGCTGGGCTTATCGACAGAGAAGCTGGCCAATCATAAAGTGCCTCAACAGGTGACTGACATCCCTGATAGGGTGGTCCAGGTGGCCTGTGGAGGAGGGCACACGGTGGCGCTTACAGAGAATGAGGTGTATTCTTTTGGCCTGGGTCAGTTTGGACAACTCGGTCACGGCACCTTCATATTCGAGTCTCGCTTGCCCAGAGTGGTTGAGCATTTCAGGAAGGGCAGAGTTAAACATGCGGCATGTGGAGAGAACCATACTGCGCTGATTACAGACAATGGCCTTTTGTACACTTTTGGTGATGGTCGGCATGGAAAACTGGGGCTTGGAGAGGAAAACTTCACCAACCAGTTCAAACCAACGTTGTGTCCGAGATTTCTTGACTACCACGTACATTCTGTTACTTGTGGTGGGTGTCACATGCTTGTTTTGGCAAAGCCCAGAACTGAAAGACCAGATGACTTAATCTTAGAGGAGGATGACGTCACTGAAGACTACCTTGAGAAGTCTTATACTGAATTACTGGGGGACACACACAGTCAGACCACCCTAAACAGGAGTCTCTCAGCTCGGGTCAGACGCAGAGAAAGGGAACGTTCACCAGATCAGTTTGGACAGATGTTTCGAACACTTCCAGCACTGAGTGGGAATCAGAGTGCATCTCTATCTGTTCCCAGCCAGATACGTCCCTCCAGCAAGCAACTTGGAAAGATTCCTCACAATAGCCTTAAAACTCCTGGAATTAGAGCGAAGTCTTTTGATGACAGAAGCAGTGTGGAGGATAGCGAGAGTGTAAAAGACCTTGGAGAAACCACTGACTTATTAAACCTGACTCACATAATGAAGATGGACCCTAGCGATAATACACTTACATTGTCTCCCATGGAGAAGTCTCTACAGTTCCAGACAGATGAGATGAGGAATGGAGAAGCAGAAGAACATGAAGAATATTtagatgatgaggaggaggaagaagatgaagaggaggaagaagaagaggaagagcacCCAAGGGGAAAAGAGGAGGAAAAGTGTGAAGAGAGGGAAGATATTGCAGACAAGATGAGAAAAGAGACTGAAGAGCAGGAGCAAAACACTACAGATCCAGATGTACAGAAAAAGCAGATTATAGAAGAAGAATCTGTCCCTGATGGACCAATGAAAGTGAATTCTGTAGATTCTGACCCTGCTGCCCTTAAGAAGGAGGAGACGTGGTCTGAGAGAAATGAAGTTACGGACGACAAACTAAAAACCATTTTTGGCTCTAAAAACAGGCTTTCTCTTTTCAAAAGGTCTTCCACCAAAGGCAGTCAGCCAGAGAGCGGCACATCAGGCAAACCAGCATCTGGTGCTCCTCAAATCTCAGAGACTCGAGATCCAGAGAGTTCTAGCAGTGAAACACAGACAGCAGGCCAAACAAAAACATCCAGTCGATCACGCTCAGCCACTTGCAGTCTGCTTTGACACCTCTCAGCTGCGAGGAAACTGTCTTAATTGGAAACCTGGAATTAATGAAGCAACATTACGTTAGTGTTACCAGTACTGTGCCTTTGTGCTGCAATGCAGACGACAGAAAGCAACTAGCTTTAACAGTAAACAACTTTAATTGGCATTTAAGTGTGTTTTTGTTTCGGCACTACATCGTATAATGTTATGTCCAATGTATATTTGCAGTGTCTGAATTTTGCAAATGTTTATCAAATGCATTCACATAAAAAAGTCATTACGTGGGAGTGAATTTACTAATGTGCCGTATGTCtagaaatataattatatatgtatgtgtgtgtgctttttatacctatttatttatatttgactaAAGACTTTTGATGAAGCACCTGTgcactttatatatttaaaatcttgTATTATTTCAgggtaattttttttcaattacatttttgtaaacatcTCAAAATCTTTGTATTTGATGTGAAGTAAATATTAACTCC

Function

symbol description
rpgrb Acts upstream of or within cilium assembly; epithelial cilium movement involved in determination of left/right asymmetry; and retina morphogenesis in camera-type eye. Is expressed in several structures, including heart; liver; neural tube; optic cup; and pleuroperitoneal region. Human ortholog(s) of this gene implicated in X-linked atrophic macular degeneration; X-linked cone-rod dystrophy 1; X-linked retinitis pigmentosa and sinorespiratory infections; retinitis pigmentosa; and retinitis pigmentosa 3. Orthologous to human RPGR (retinitis pigmentosa GTPase regulator).

GO:

id name namespace
GO:0046548 retinal rod cell development biological_process
GO:0007018 microtubule-based movement biological_process
GO:0060271 cilium assembly biological_process
GO:0060287 epithelial cilium movement involved in determination of left/right asymmetry biological_process
GO:0060041 retina development in camera-type eye biological_process
GO:0010842 retina layer formation biological_process

KEGG: NA

ZFIN:

id description
ZDB-GENE-081015-2 Acts upstream of or within cilium assembly; epithelial cilium movement involved in determination of left/right asymmetry; and retina morphogenesis in camera-type eye. Is expressed in several structures, including heart; liver; neural tube; optic cup; and pleuroperitoneal region. Human ortholog(s) of this gene implicated in X-linked atrophic macular degeneration; X-linked cone-rod dystrophy 1; X-linked retinitis pigmentosa and sinorespiratory infections; retinitis pigmentosa; and retinitis pigmentosa 3. Orthologous to human RPGR (retinitis pigmentosa GTPase regulator).

Ensembl:

ensembl_id ENSDARG00000057074

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00006897 False 4258 mRNA 0.45 14 29770966 29786528
TCONS_00006898 True 2628 mRNA 0.44 17 29770966 29790222

Neighbor

gene id symbol gene type direction distance location
XLOC_003526 gucy1b2 coding upstream 15824 29739348 ~ 29755142 (+)
XLOC_003525 rnf207a coding upstream 93252 29671661 ~ 29677714 (+)
XLOC_003524 NA coding upstream 179770 29590873 ~ 29591196 (+)
XLOC_003523 BX548000.1 coding upstream 199438 29566746 ~ 29571528 (+)
XLOC_003522 wu:fi42e03 coding upstream 230933 29537756 ~ 29540033 (+)
XLOC_003528 dynlt3 coding downstream 404 29790626 ~ 29794308 (+)
XLOC_003529 grpr coding downstream 65810 29856032 ~ 29877090 (+)
XLOC_003530 NA coding downstream 115026 29905248 ~ 29906829 (+)
XLOC_003531 il1fma coding downstream 175600 29965822 ~ 29972154 (+)
XLOC_003532 si:ch73-226l13.2 coding downstream 185608 29975830 ~ 29981972 (+)
XLOC_003369 CR854846.2 misc upstream 13647884 16122786 ~ 16123082 (+)
XLOC_003318 CR450764.6 misc upstream 17058970 12711700 ~ 12711996 (+)
XLOC_003317 CR450764.16 misc upstream 17076703 12693967 ~ 12694263 (+)
XLOC_003316 CR450764.11 misc upstream 17085367 12685304 ~ 12685599 (+)
XLOC_003315 CR450764.18 misc upstream 17090938 12679732 ~ 12680028 (+)
XLOC_003521 CR450796.1 non-coding upstream 418745 29352101 ~ 29352221 (+)
XLOC_003520 NA non-coding upstream 562773 29207886 ~ 29208193 (+)
XLOC_003519 NA non-coding upstream 934267 28797267 ~ 28836699 (+)
XLOC_003534 NA non-coding downstream 300933 30091155 ~ 30103960 (+)
XLOC_003537 NA non-coding downstream 462718 30252940 ~ 30253557 (+)
XLOC_003541 NA non-coding downstream 508481 30298703 ~ 30300054 (+)
XLOC_003550 CR855274.1 non-coding downstream 1184549 30974771 ~ 30974892 (+)

Expression


Co-expression Network