G1593032 (spcs3)


Basic Information

Item Value
gene id G1593032
gene name spcs3
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 13825559 ~ 13829469 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1824132
CGTAAGATAATGATAATTGATAGATCAACAGGAAAGAGAACAGGTCTGGGTTCTATTCATCACGCCGATTTTGCAACAGAAACCGTTTAGTCGAAACGGAAAACATATCGCAACGAAAATTAGAGTtcgaagagtgccttggtccttcTTTCTATGAGATCAGTTCAGGTAGGTACCTCCCCGCTTGGTTCTTAAATGGTCAACCGTTCCCGTTGCAAGACGTAATGTATACACCCGTTGTAAGACACTTACGTTGCTCTTGGTGGCGTACTCGGCAGACAAGTAGAGGAAGAGCTGCTTGACGTTCCAGTCAAATATGGGCTTTATGTCAGCAGAGAGGTCAAAGGTGATGAACCCCAGGTCACTTCTCTCCCTGGGTCCTGTGAAGTCATCCACGTTTTTCAGCATTACTCTCGAGACGTGGATATCCACCGGTACCCTGCGGTCTTTGAACGCCGTCGTGATAAAACAGCCAAACGTCAAAGCTGCCATCACGCTGAGCGAGAAGGCGAAGAGGGAATTTGCCCTCGACAACACTGTATTCATTTTGAAATACAATGATATTACAGTTTCCTACACAGCGATGCGGAACACTTTTACCCGCAACAGCAGGAAGTGTAG
>TU1824133
atttaaactaggcaagtcagttaaagaacaaattcttatttacaatgacggactacccagacgacgctgggacaattgtgcgccaccctatgggactcccaatcacggccggatgtgacacagcctggattcgaaccagggactgcagtgacacccCTTACACTAAGATGCAGGGCCTATCCTATTCTCTACTAATAACCAGGTATACAGAATTATCtttcagatgttttttttataaaaaagaaAGCAACAGCTACAGTGAACAAACAAAACTGAATTATTCGAAAGATTTCACATTGCCATTCATTATACAGGTACTGAGTACTACTGTAGAGTTACATGAAGCATGAGGATTCCTGACTTTCTGGTTACTAAGTCCATCTCAGCAATGACCATTTAAACCAAGGATTGCTAGCAGTCAAAGCCTTGCTTCCTCCTCGATTCCTTACCTCTCTCAAAGTGCATGGAAGTAGATGATCCAAGGTCTCTCCTCTAATGAACTTTGAGAGGAATTTAGGAAAAAATATGCAAGGATTTCACTGTTAGCAACATTTAAACAGCCTTTTTTCCTGTGGCAGCATCAATGCAAAGGCATACAATTGAATGGTTCCCAAATGTCCACTTTTATTAAAAGTCATAAAAGATGACACAACAAACACAAACGATGGAACAGTTTAGTAGCTCTTGGTGGTCTCGTATGATTCAGGGAAGGGGACCGACATGTGGCCAGAGCCCATGACCAGGGGCAGGATCCCAGCGTTGGGCACCACGTTCCAGGACAGAGTCAGGGTGATGTTTTTGTTCGCCCGAAGACCGTTTCCATCATCGAAGAAGAAGTACTTGGACTTCATGTCTCTGAGGTTGAGCTTGGTGCTCTCTCCTCTGAGCACGATCTTATCCCACAGAACCACCTGGTTCAGGGCGTTGCTCTTGGTGGCGTACTCGGCAGACAAGTAGAGGAAGAGCTGCTTGACGTTCCAGTCAAATATGGGCTTTATGTCAGCAGAGAGGTCAAAGGTGATGAACCCCAGGTCACTTCTCTCCCTGGGTCCTGTGAAGTCATCCACGTTTCAGCATTACTCTCGAGACGTGGATATCCACCGGTACCCTGCGGTCTTTGAACGCCGTCGTGATAAAACAGCCAAACGTCAAAGCTGCCATCACGCTGAGCGAGAAGGCGAAGAGGGAATTTGCCCTCGACAACACTGTATTCATTTTGAAATACAATGATATTACAGTTTCCTACACAGCGATGCGGAACACTTTTACCCGCAACAGCAGGAAGTGTAG

Function

symbol description
spcs3 Predicted to enable peptidase activity. Predicted to be involved in protein targeting to ER and signal peptide processing. Predicted to be located in endoplasmic reticulum and membrane. Predicted to be integral component of membrane. Predicted to be part of signal peptidase complex. Orthologous to human SPCS3 (signal peptidase complex subunit 3).

NR:

description
PREDICTED: signal peptidase complex subunit 3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1824132 False 621 TUCP 0.47 2 13825559 13827241
TU1824133 True 1290 lncRNA 0.45 4 13825559 13829469
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110497394 LOC106610162 coding downstream 721 13814235 ~ 13824838 (-)
LOC110497393 LOC106610164 coding downstream 70789 13672694 ~ 13754770 (-)
LOC110497392 LOC106610166 coding downstream 266037 13453299 ~ 13559522 (-)
LOC110497391 LOC106610167 coding downstream 373037 13422278 ~ 13452522 (-)
LOC110497390 LOC106610168 coding downstream 442607 13367898 ~ 13382952 (-)
vegfc LOC106610161 coding upstream 53843 13883312 ~ 13944041 (-)
LOC110497396 LOC106610063 coding upstream 1062296 14891765 ~ 14936266 (-)
LOC110497398 xpa coding upstream 1163041 14992510 ~ 14997435 (-)
LOC110498656 LOC106610071 coding upstream 1173383 15002852 ~ 15016671 (-)
trnak-cuu-76 NA coding upstream 1173826 15003295 ~ 15003367 (-)
G1593026 NA non-coding downstream 40585 13784397 ~ 13784974 (-)
G1592990 NA non-coding downstream 101375 13721269 ~ 13724184 (-)
G1592935 NA non-coding downstream 118716 13696798 ~ 13706843 (-)
G1592802 NA non-coding downstream 236502 13588833 ~ 13589057 (-)
G1593089 NA non-coding upstream 48270 13877739 ~ 13879805 (-)
G1593147 NA non-coding upstream 60362 13889831 ~ 13891378 (-)
G1593151 NA non-coding upstream 66036 13895505 ~ 13895710 (-)
G1593169 NA non-coding upstream 94971 13924440 ~ 13924913 (-)
LOC110497387 LOC106602387 other downstream 586369 13226169 ~ 13239221 (-)
G1591322 NA other downstream 1573031 12251791 ~ 12252528 (-)
LOC110497375 LOC106610178 other downstream 1621145 11933020 ~ 12261321 (-)
G1590583 NA other downstream 2183693 11641407 ~ 11641866 (-)
G1590098 LOC106577701 other downstream 2554741 11270516 ~ 11270818 (-)
G1595424 NA other upstream 653956 14483425 ~ 14483790 (-)
LOC110498659 LOC106610072 other upstream 1430423 15246799 ~ 15287139 (-)
G1596136 LOC106610103 other upstream 1970784 15800253 ~ 15901185 (-)
G1596285 NA other upstream 2195458 16024927 ~ 16025915 (-)
LOC110498490 zn271 other upstream 2350121 16178232 ~ 16191766 (-)

Expression

G1593032(spcs3) Expression in all Baseline Samples

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The chart has 1 Y axis displaying values. Range: 0 to 25.
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G1593032(spcs3) Expression in each Bioproject

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G1593032(spcs3) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 750.
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Co-expression Network