XLOC_000353 (cpb2)


Basic Information

Item Value
gene id XLOC_000353
gene name cpb2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 29759678 ~ 29764060 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00000603
ATTTGaagacagaacaaaaaaaatgagGGCCCTAATACAGCTGGCTTACTTCATCTGTTTTAGCATCTTTCTTGAGACGTGTCTCTGCAAAGTGAAACATGACCAGGTTTTGGCTATCACTGTATCCTCACAGGAACATGTGGAAAAAGTGCAGAACCTTACAAGTCACAACGAGACTGCTTTGTGGCAACCTGCTTCACCCAATTACATTACAACAAACTCTGAAGTTCACCTTTACATTCAGTCAACAAGTGTGCAGTTTGTCAAAGAACACCTTCGTGAACATGCCATTACATTTAGAGTTCTTGTGGAAAACACAGCAGCACTTGTTGCGATGCAGATCAGAAATGATACATCAGATCCCCGAAGCGGAGGCGTCTTCTATGAGAGATATCATTCCTTAgaagatATCTACTACTGGATAAATAAGACCAGCCGAGAACATTCAGACATGGTGAAGGTCATTCTTATTGGATCATCTTCTGAGAAACGGCCACTCTATGTTCTGAAGCTGTCAGGCAAGAGGGAAGAAGAGGTGAACAGAGCCATGTGGATGGACTGTGGTATTCATGCACGGGAGTGGATCGCTCCAGCCTTTTGCATGTGGTTTGTCAATTATGCACTAGCATTTTACAACCAGAACACTGAAATCACAGAGATGCTTAATAAAATGGACATTTACATCTTGACAGTCATGAACCCAGATGGATACAAGTACACTTGGACAACAGATCGTATGTGGAGGAAAAATCGTTCTGAAAACAAAGACAGCTATTGTGCTGGAGTTGATTTGAACAGAAATTTTGATGCAAACTGGTGCACTAAAGGAGCCTCCGATGATCCATGTGATCCCACTTATTGCGGTCAGTTTCCAGAGTCTGAACCAGAGACCCAAGCTGTGGCAAAGTTCCTGCGCTCCCATAAGGACACAGTCAAGCTGTACCTCTCCATTCACTCCTATTCTCAGATGCTCTTGTTTCCTTACTCCTGTTCCTATAATGAGATTCCAAACCACAATGAACTGtttGAACTTGTTAAAGAGGCCTCAACAAAAATACGCAGATACTACAGGAATAACTATAAATATGGATCCGGTGCAAAAACCATTTATTTAGCTCCAGGAGGCTCTGATGATTGGGCATATGATCTAGGAATAAAATATTCCTTCACTTTTGAGCTTCAAGACCGTGGTCAATATGGTTTTCTTCTCCCGCCCAGCTTTATCCCACAGGCTTGTAATGAGGCTCTTCTGGCTGCAAAGGTCATAGCTTTACATGTGATCAACAAAACCCAATGATTTTTTCCGCTACAGACAACCTGAGCAAACTATGAAATGTGCTACAGATTCAAATAATGAACTTTTccatttagttaaaaataaatgtgcaggctactttaaatgttcttattACAGTTCAgctatagcactttattttacagtccaGTTCCACATCTACATACTGCATCTAATTAAAGTGAATAGGTAATAAATAATCCCAAGCCTTAAACTTGAGCCTAGGAGCATTAAAGTGCATGTAGgtctactgtaaaataaagtgcaaacaGAAAGCCCTTGataagaaataaatacataatacttattaataaagaaacaaa
>TCONS_00000604
ATTTGaagacagaacaaaaaaaatgagGGCCCTAATACAGCTGGCTTACTTCATCTGTTTTAGCATCTTTCTTGAGACGTGTCTCTGCAAAGTGAAACATGACCAGGTTTTGGCTATCACTGTATCCTCACAGGAACATGTGGAAAAAGTGCAGAACCTTACAAGTCACAACGAGACTGCTTTGTGGCAACCTGCTTCACCCAATTACATTACAACAAACTCTGAAGTTCACCTTTACATTCAGTCAACAAGTGTGCAGTTTGTCAAAGAACACCTTCGTGAACATGCCATTACATTTAGAGTTCTTGTGGAAAACACAGCAGCACTTGTTGCGATGCAGATCAGAAATGATACATCAGATCCCCGAAGCGGAGGCGTCTTCTATGAGAGATATCATTCCTTAgaagatATCTACTACTGGATAAATAAGACCAGCCGAGAACATTCAGACATGGTGAAGGTCATTCTTATTGGATCATCTTCTGAGAAACGGCCACTCTATGTTCTGAAGCTGTCAGGCAAGAGGGAAGAAGAGGTGAACAGAGCCATGTGGATGGACTGTGGTATTCATGCACGAGTTGATTTGAACAGAAATTTTGATGCAAACTGGTGCACTAAAGGAGCCTCCGATGATCCATGTGATCCCACTTATTGCGGTCAGTTTCCAGAGTCTGAACCAGAGACCCAAGCTGTGGCAAAGTTCCTGCGCTCCCATAAGGACACAGTCAAGCTGTACCTCTCCATTCACTCCTATTCTCAGATGCTCTTGTTTCCTTACTCCTGTTCCTATAATGAGATTCCAAACCACAATGAACTGtttGAACTTGTTAAAGAGGCCTCAACAAAAATACGCAGATACTACAGGAATAACTATAAATATGGATCCGGTGCAAAAACCATTTATTTAGCTCCAGGAGGCTCTGATGATTGGGCATATGATCTAGGAATAAAATATTCCTTCACTTTTGAGCTTCAAGACCGTGGTCAATATGGTTTTCTTCTCCCGCCCAGCTTTATCCCACAGGCTTGTAATGAGGCTCTTCTGGCTGCAAAGGTCATAGCTTTACATGTGATCAACAAAACCCAATGATTTTTTCCGCTACAGACAACCTGAGCAAACTATGAAATGTGCTACAGATTCAAATAATGAACTTTTccatttagttaaaaataaatgtgcaggctactttaaatgttcttattACAGTTCAgctatagcactttattttacagtccaGTTCCACATCTACATACTGCATCTAATTAAAGTGAATAGGTAATAAATAATCCCAAGCCTTAAACTTGAGCCTAGGAGCATTAAAGTGCATGTAGgtctactgtaaaataaagtgcaaacaGAAAGCCCTTGataagaaataaatacataatacttattaataaagaaacaaacctT

Function

symbol description
cpb2 Predicted to enable metallocarboxypeptidase activity. Predicted to be involved in fibrinolysis and proteolysis. Predicted to be active in extracellular space. Is expressed in liver. Human ortholog(s) of this gene implicated in chronic kidney disease. Orthologous to human CPB2 (carboxypeptidase B2).

GO:

id name namespace
GO:0042730 fibrinolysis biological_process
GO:0006508 proteolysis biological_process
GO:0005615 extracellular space cellular_component
GO:0004180 carboxypeptidase activity molecular_function
GO:0004181 metallocarboxypeptidase activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
ko04610 Complement and coagulation cascades
ko04972 Pancreatic secretion
ko04974 Protein digestion and absorption
ko01002 Peptidases and inhibitors
ko02042 Bacterial toxins

ZFIN:

id description
ZDB-GENE-050522-259 Predicted to enable metallocarboxypeptidase activity. Predicted to be involved in fibrinolysis and proteolysis. Predicted to be active in extracellular space. Is expressed in liver. Human ortholog(s) of this gene implicated in chronic kidney disease. Orthologous to human CPB2 (carboxypeptidase B2).

Ensembl:

ensembl_id ENSDARG00000037144

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00000603 False 1617 mRNA 0.40 11 29759678 29764056
TCONS_00000604 True 1414 mRNA 0.40 10 29759678 29764060

Neighbor

gene id symbol gene type direction distance location
XLOC_000352 raph1b coding upstream 16038 29664336 ~ 29743640 (+)
XLOC_000351 si:dkey-228l14.1 coding upstream 240676 29515160 ~ 29519002 (+)
XLOC_000350 CR774189.1 coding upstream 251205 29507647 ~ 29508473 (+)
XLOC_000349 NA coding upstream 258644 29500308 ~ 29501034 (+)
XLOC_000348 CT573186.2 coding upstream 306945 29451465 ~ 29452733 (+)
XLOC_000354 zc3h13 coding downstream 2665 29766725 ~ 29797907 (+)
XLOC_000355 tm9sf2 coding downstream 34080 29798140 ~ 29824375 (+)
XLOC_000356 zic2b coding downstream 67699 29831759 ~ 29860895 (+)
XLOC_000357 pcca coding downstream 98014 29862074 ~ 29953746 (+)
XLOC_000358 NA coding downstream 310575 30074635 ~ 30079529 (+)
XLOC_000347 CT573186.1 non-coding upstream 313959 29444452 ~ 29445719 (+)
XLOC_000346 BX908780.2 non-coding upstream 447119 29311527 ~ 29312559 (+)
XLOC_000360 dre-mir-740 non-coding downstream 401893 30165953 ~ 30166065 (+)
XLOC_000361 BX255890.2 non-coding downstream 463331 30227391 ~ 30227505 (+)
XLOC_000365 BX548015.2 non-coding downstream 1089909 30853969 ~ 30859524 (+)
XLOC_000369 NA non-coding downstream 1377059 31141119 ~ 31144527 (+)

Expression


Co-expression Network