XLOC_003530


Basic Information

Item Value
gene id XLOC_003530
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 29905248 ~ 29906829 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00008632
gtcaatatccaaatccagctaattgagtaatccacgtacgaagaacggaccccagcagTTAGttaagaaacaacaacaacaacaacaacaacaacaaaaaagccctTACTGGAAAAGCTACTGCTCCACTGCTGTTTCTGAGACAACTTAAGGTCAGGTTCGCTTATTAATAATATGCTATGCTAGTTAGCTTACCATCAGATGGTAACACATTACGTTAAACGACGAGTCATGGCCGTGCTCTTACAGTTTttctaattaataatttatttattcgtgTTTTCCCCAAAGCTAGACCTGGCATTCCTGTCATGGCTATTATCAGGTACAGTAATAAACCTCTGTGGAAGAGTTTCCATGGAAAATAGGTCTGTTTGTTCAAGAAATAATACAGTCCAGCATTAAAgtgctatttgtgtgtgtgtgtgtaaacagaagcaacttaaagaaatatttacagtCTGTTGCTCTTGACCAAACCACCGGGCAGCCACCATATTGTAAATAAGTGCTAACTTTAAGTGTTTTCCAGATACTGTAGCATTAACAGCTCTTTTTTCATTACTTTTGTTAGGTTGAAGAACATAGAAGACCCAGCTTTTCACCTTTTTATCTCAGAAAAATGTTTCAAGGTAAGTCTATTTTTTTCTACAGAAACACTAACGTTAACTTCTATCGTCTTTCTGTAGGATAAATGACTCACTCTTTGCTGGCAAGTTCCCATTGTGACAAGTAGTTACAGTAATTTTAGGCTATTTAATTTTAGGACCCTTTAAACAAGTATAAAACCCAAAACGATTGATTAAAATGTACTGTACAACTTTTTGTGTCATAGTCAGTGCTTGTGACAACTTCCTCAAACTTTCCTAGCTGTTTATTAAATCAGAAAAGAACAATATTTGCTGCTGAATTAATATTGATTTCAGGTTTGGACAGATGcaacaataataaatcaatgaaatTGAAATGGTATTGTAAGAGCACATGAATTTTCTTTTGATAATATTTAATGGGCTTAAATTATTTCTCAGCTTAAGTTATAGTATGTATTTGGAACGCAACAATTactttttcctctttgaaaaTATTTCATACAGAACAATATGCTTTTGTACAGAATGACATAATGGTACGCAGTCCTTGAAAATGCCACAATCAAaggcttatttattaaaattgccATTTTTATTTGAACAGCTTTTATCTCCAGTACATAATTTCTTACTGTTGGCATCATGCTCGGTGGTGAACACTTCAACTTCAAAAGAGGATTGGCCATTTCCTCAATGCATAATGCCGACTAATGAAGTATGCACTTCTCTTGTGCCATTCAAACATGGCATAGGGTAAACCCACACAGATCCTGCTGGCCCAtcagaaaatattttataattcatacttaaatttaacataaattatGTAATTCCGCTGGCATTCTTTTGATTGAAACGCTGTCTTCAGTGCAAAGGAGATGTTTGATGTGGTCAGACAGGAAAAGCAGCCTTagttaaatgttttgaatgcTATCACTGCTGTTATGGATGAGATGAgtgaataaatgttaataaaagtaattttattt

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00008632 True 1582 lncRNA 0.35 1 29905248 29906829

Neighbor

gene id symbol gene type direction distance location
XLOC_003529 grpr coding upstream 28158 29856032 ~ 29877090 (+)
XLOC_003528 dynlt3 coding upstream 110940 29790626 ~ 29794308 (+)
XLOC_003527 rpgrb coding upstream 115026 29770966 ~ 29790222 (+)
XLOC_003526 gucy1b2 coding upstream 150106 29739348 ~ 29755142 (+)
XLOC_003525 rnf207a coding upstream 227534 29671661 ~ 29677714 (+)
XLOC_003531 il1fma coding downstream 58993 29965822 ~ 29972154 (+)
XLOC_003532 si:ch73-226l13.2 coding downstream 69001 29975830 ~ 29981972 (+)
XLOC_003533 nhsb coding downstream 92585 29999414 ~ 30090019 (+)
XLOC_003534 NA coding downstream 184326 30091155 ~ 30103960 (+)
XLOC_003535 cdkl5 coding downstream 254339 30161168 ~ 30232133 (+)
XLOC_003369 CR854846.2 misc upstream 13782166 16122786 ~ 16123082 (+)
XLOC_003318 CR450764.6 misc upstream 17193252 12711700 ~ 12711996 (+)
XLOC_003317 CR450764.16 misc upstream 17210985 12693967 ~ 12694263 (+)
XLOC_003316 CR450764.11 misc upstream 17219649 12685304 ~ 12685599 (+)
XLOC_003315 CR450764.18 misc upstream 17225220 12679732 ~ 12680028 (+)
XLOC_003524 NA non-coding upstream 314052 29590873 ~ 29591196 (+)
XLOC_003523 BX548000.1 non-coding upstream 333720 29566746 ~ 29571528 (+)
XLOC_003521 CR450796.1 non-coding upstream 553027 29352101 ~ 29352221 (+)
XLOC_003520 NA non-coding upstream 697055 29207886 ~ 29208193 (+)
XLOC_003519 NA non-coding upstream 1068549 28797267 ~ 28836699 (+)
XLOC_003537 NA non-coding downstream 346111 30252940 ~ 30253557 (+)
XLOC_003541 NA non-coding downstream 391874 30298703 ~ 30300054 (+)
XLOC_003550 CR855274.1 non-coding downstream 1067942 30974771 ~ 30974892 (+)
XLOC_003551 CR855274.2 non-coding downstream 1141025 31047854 ~ 31055288 (+)

Expression


Co-expression Network