G1594967 (LOC106610042)


Basic Information

Item Value
gene id G1594967
gene name LOC106610042
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 16834730 ~ 16835672 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1826371
CTTCCCACAGTGTGTACAGGTGAACGGCCTCTCTCCTGTGGACCTTCAGCTGCATCTTCAGCTggtgggagaacctcttctcacactgggtaAGCTGTAGGACTTCTCCCCTCTGTGGACTCTCTGGTGTCTCTTCAGGTTGGACGAGTGTGAAAAACTGGCCCGACACATGTGGCAGCCaaatggtttctcccctgtgtggaccctctggtgcctcttcaggctgGACAAGTGTGAAAAACTGTCCTGACACATGTGGCAGCTGAACGGTTTCTCCCCCGTGTGCATCCTTTGGTGGATCTCCACCTGTTTGGGGAAACGGAAGGCTTTCCCGCAGAACGAACACGGGAAGCGCTTCTCTTTGCCACCGGATCTACTGATAGCGTCACTACTACCGTCATTTGTCAATGGGCTTGTGTAGCCATTTAGTGTTGAGGCACTGGCATTGTCTGAGGTCTGGTTTAACAttaggagagtgtgaggaggattaaggccagggagtgtctgtgttgTCGCAGGGTCCATGTCCCAGTTGATAGATCCTATAGAAGGCAAGCTGAAGGCAGCACCTGTTAGGGGGTTAACCTGAGGCGAAATCAGTCTCTCTGAATAACAACTATAGGAGCAGGACGGCGCATCGCTAGCCGAGTCTGTGTCTGATCTCTCCTGCCGCATATGGACACCTCCCCGTCCCTGCAGACCAAATCTACCCCTCGCCCTGGTCTCAGCCAGTCTGTTGTTTTGGAGAATAAGtttggttgttgttttgtgtttgactgtctgtttctggttgttttgtcCCAGCCCAGAGTTGAGGATGTTGTCCCAACCACTGGCCTCCACTATGTCGCGTCTGGTCCTGGCCTGCTCTGTGATGTTGTCCCCTGGGCCCTTGACTGCACCCGTCTTGGTCTGGGAATCCAATATGGCCGTCCAgtctcct

Function

NR:

description
zinc finger and BTB domain-containing protein 20-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1826371 True 943 lncRNA 0.53 1 16834730 16835672
Loading

Neighbor

gene id symbol gene type direction distance location
LOC118941345 LOC106602534 coding upstream 16612 16728206 ~ 16818118 (+)
LOC110498500 LOC106602480 coding upstream 428172 16401695 ~ 16406558 (+)
LOC118941341 LOC106610088 coding upstream 434011 16396267 ~ 16400719 (+)
LOC110498467 LOC106610080 coding upstream 445528 16250632 ~ 16389202 (+)
LOC118941347 NA coding downstream 178564 17014236 ~ 17037820 (+)
LOC110498663 LOC106609880 coding downstream 207499 17043171 ~ 17083684 (+)
stra6l LOC106609881 coding downstream 279577 17115249 ~ 17139219 (+)
LOC118941458 LOC106602533 coding downstream 310545 17146217 ~ 17151611 (+)
LOC118941545 NA coding downstream 313056 17148728 ~ 17156432 (+)
G1594988 NA non-coding upstream 11028 16822920 ~ 16823702 (+)
G1594986 NA non-coding upstream 13172 16821030 ~ 16821558 (+)
G1594985 NA non-coding upstream 13712 16820688 ~ 16821018 (+)
G1594983 NA non-coding upstream 15232 16819228 ~ 16819498 (+)
G1594952 NA non-coding upstream 73597 16760738 ~ 16761133 (+)
G1594993 NA non-coding downstream 33189 16868861 ~ 16869618 (+)
G1595019 NA non-coding downstream 48016 16883688 ~ 16883935 (+)
G1595021 NA non-coding downstream 49427 16885099 ~ 16885423 (+)
G1595023 NA non-coding downstream 50667 16886339 ~ 16887245 (+)
G1595024 LOC106609871 non-coding downstream 52160 16887832 ~ 16888867 (+)
G1594955 NA other upstream 61021 16765543 ~ 16773709 (+)
G1594895 NA other upstream 156608 16675609 ~ 16678122 (+)
G1594737 LOC106610136 other upstream 398363 16434453 ~ 16436367 (+)
G1594292 LOC106610101 other upstream 550527 16279290 ~ 16284203 (+)
LOC110498487 zn271 other upstream 600685 16219935 ~ 16238389 (+)
pold4 pold4 other downstream 785746 17621396 ~ 17623478 (+)
G1597295 NA other downstream 1172051 18007723 ~ 18018250 (+)
G1597342 LOC106609914 other downstream 1207739 18043411 ~ 18104592 (+)
G1598786 NA other downstream 2197213 19032885 ~ 19033176 (+)
LOC110497472 LOC106609985 other downstream 2490756 19326377 ~ 19328349 (+)

Expression

G1594967(LOC106610042) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 6.
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G1594967(LOC106610042) Expression in each Bioproject

Bar chart with 18 bars.
G1594967(LOC106610042) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 40.
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Co-expression Network