G1595127 (LOC106597479)


Basic Information

Item Value
gene id G1595127
gene name LOC106597479
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 17088547 ~ 17090633 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1826569
TTTGCATACACGTTGGAAATACTGTGGAattcagggttggggtcaattctaaTTCAATTCAGGAATTGATTTAAGTTAAAAAACGTGACAACTTTTTAAGTAAACAGCTTCTCCTTTtcagtttataaaaaaaaaatattgaaaaaaaacTGCCATTTCAgtttctgaattgactgacccTAACACCCTGGTGAATATATTGTGTTTTGCATGAGCATTATACAATGCATCGGTAACATTAGAAAGGGATGATGTCCCCTTGCCAAGTCTGGCTTTAATATAGGCTCATCCGTAATGCTTTAAAAGTCTGTTTGGATTGGAATGCACTGTCTTGCCTGTTGAAAATGTCGTCATCTTCCCCACCCCAGCCCCAGTAGTTGTTGGGAAAGCCGTTGATTTCCAGGAACTGCTCCTTACTTAACGCTGAGACACCGCCAAAGTACTGGTTATAGGGCAACTTGAAGCCAAACTTGTCCATGGAGACAGACAGGTGTCTGGGCTGGCTGAAGCATTTGTAGGGGTTGCGGTCATCCATGGGGATGATGTCCACGTCACTGAACACAAAGCAGTCGTAGTCATACTCTTTCAGGGCCTCAGCATAGCCAATGTTCATCAGCTTGGCCCTGTTGAATGTGTCGTCTCCATCCTAATGAAGAAATTACAGTAATTTTCAAAACATGGGTACGCTAAATTATTTGCCAAATATTCACTTATAATTGAATAAAGTTTGTCCTTAGAACATGTTTAATTCATCAAaaagtgtatttaaaaaaaaaatctggtatATGCAAATTGATTTCAAGTTGATGTACTCTTACATTttgcatttgagtcatttagcagacgctcttatccagagcgacttacagttatcTAGGTGGGGCAACCACATCACAGACATAGAAAGTCTTTTTGTTCTTCTTAGCTGTCACAGATCTCCCATTGTTGGGTAAACTATTTAAAGATTTACTGAgacggggctcccgagtggcgcagcggtgtaaagcactgcatctcagtgctagaggtgtcacgacagaccctggtttgattccaggctgtatcacaactggttgtgattgggagtcccatagggcggtgagCAATTGTCCCAGCATTGTCTGGTTTAGGGTTTGGCTGGattaggccgtcgttgtaaataagaatgtgttcttaactgacttccctagttaaatacatttttaaaaagcaagCAGACCAGTTTTCTAAGTCACATTCTAGACAGTTCTCTTTCCCAACACCCAGCTAACTTTGCATTGTCATTAGCATATGAGCAAAGTACTATATAAAAAAAGGACGGTCCGCACTCACTACTTTTTTATTTTACAGATTACTTCAGGTCAACGCACCACCTTCTAAAAGACAGTCACTCGGGGCCCGCTTcttggacacagattaagcctcgTCCTGGTCTAAAAATAAATTTAGTCTCGGACTATGCTTCATGTGTGTCTGTCGAAACCGCCCCTAGGAGCCCCAGACAGGTTTTGTCCTTATCTCATATGAGGAAAGTAAACAATATTGGCATAACTATCATGCAATACACTAAATAGAAACTCCAAGGGACTTCCCCTTAAGAAATGTCAGAAACTAAGCAACAGCGTGTTAGAGAACCGCGGAGTATACCAACAGTCGCACTTAGTTACCTCAGGAGAAagcagaaggagaagaagaaagccACCGAGCATTGGAAGAACCCAACCATACTTTAGCAGAGATGTGATTGGTTGCAAACATGCAGTGCTAGGAGAGTGGAAACAGAGTTAGTAGTAGTTATTAGTATGTCAGAAtgcgaaacagagagagagggaaagagagagagacagaga

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1826569 True 1850 lncRNA 0.42 3 17088547 17090633

Neighbor

gene id symbol gene type direction distance location
LOC110498663 LOC106609880 coding upstream 4863 17043171 ~ 17083684 (+)
LOC118941347 NA coding upstream 50727 17014236 ~ 17037820 (+)
LOC118941345 LOC106602534 coding upstream 270429 16728206 ~ 16818118 (+)
LOC110498500 LOC106602480 coding upstream 681989 16401695 ~ 16406558 (+)
LOC118941341 LOC106610088 coding upstream 687828 16396267 ~ 16400719 (+)
stra6l LOC106609881 coding downstream 24616 17115249 ~ 17139219 (+)
LOC118941458 LOC106602533 coding downstream 55584 17146217 ~ 17151611 (+)
LOC118941545 NA coding downstream 58095 17148728 ~ 17156432 (+)
LOC110497420 LOC106609884 coding downstream 66606 17157239 ~ 17174227 (+)
LOC110498664 LOC106609886 coding downstream 104561 17195194 ~ 17236533 (+)
G1595126 NA non-coding upstream 923 17086890 ~ 17087624 (+)
G1595101 NA non-coding upstream 61164 17019355 ~ 17027383 (+)
G1595041 NA non-coding upstream 167617 16919705 ~ 16920930 (+)
G1595039 NA non-coding upstream 173854 16914482 ~ 16914693 (+)
G1595028 NA non-coding upstream 195969 16892366 ~ 16892578 (+)
G1595093 NA non-coding downstream 26755 17117388 ~ 17117690 (+)
G1595156 NA non-coding downstream 59131 17149764 ~ 17150173 (+)
G1595159 cplx1 non-coding downstream 85179 17175812 ~ 17186945 (+)
G1595208 NA non-coding downstream 148176 17238809 ~ 17239034 (+)
G1595209 NA non-coding downstream 148614 17239247 ~ 17239452 (+)
G1594955 NA other upstream 314838 16765543 ~ 16773709 (+)
G1594895 NA other upstream 410425 16675609 ~ 16678122 (+)
G1594737 LOC106610136 other upstream 652180 16434453 ~ 16436367 (+)
G1594292 LOC106610101 other upstream 804344 16279290 ~ 16284203 (+)
LOC110498487 zn271 other upstream 854502 16219935 ~ 16238389 (+)
pold4 pold4 other downstream 530785 17621396 ~ 17623478 (+)
G1597295 NA other downstream 917090 18007723 ~ 18018250 (+)
G1597342 LOC106609914 other downstream 952778 18043411 ~ 18104592 (+)
G1598786 NA other downstream 1942252 19032885 ~ 19033176 (+)
LOC110497472 LOC106609985 other downstream 2235795 19326377 ~ 19328349 (+)

Expression

G1595127(LOC106597479) Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 0.6.
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G1595127(LOC106597479) Expression in each Bioproject

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G1595127(LOC106597479) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 6.
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Co-expression Network