G1597342 (LOC106609914)


Basic Information

Item Value
gene id G1597342
gene name LOC106609914
gene type unknown
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 18043411 ~ 18104592 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1829078
AAAAAAAATCAGCCCAGGCTGACACGGTCGGGATCCCCACTCTCACCTGCGTTCCGACTCTGCACGTGAACTCCTCCTGGGCTGAACGAGGCAGGGAGATGGGGGTAGGCCGGGGGTGAGGACGGTCTCTGGGGGTGGGGCGCACCTCCATTCATTGCCACTTGAATAGCTTGgccctggaggggggggggacatcaGAACCAGTAGGGTAAAAACAGTGCACTCCCATTTGCAAGAAACAACGTTTATAGTGGTCAAAACGTGATGGGACAGACACCCACATAATGTTATCAGCTGGTTAAGACTCGAAGACTCTTAGTCTCTTAGTCTGTAATAACAATAGGTTTTACCGGTAAGACTAAAATGGTTATACGAGTAGACTGTGATTGTTATGAGAGGAGTGCAACAGACAGTATTGGAAAAGCGTGCTGCATCAGAGAAAACACAACAGGTTAGTTAAAAAAGAAGTAGTGGAGTAGTCGGACGTCAACAAACAACATGGGCTTACTTCAAAAATCAGGTGTTTCATTATTGGTTAGAAATGACACGTAAAAGCCGGTGTCAAATCCTTGTCACATTTAAAGACCCACAATCAAAAACTCCCACAATGGAAAAAAAAAGAGACTTAACAGGCATAGGAAATAAGTTGTTGTACCTAAAAGTTAATGACAGTTGGACAAATCCTCACATTTGTGGTATGTGAGAAACACAAAAAAGACACGCTAAGGTGGGATAACGATGCATCAAGACGTTGTTAGACTAAACCATCAGAAGAGTGCAAAGGGTGATGTTATGACAGTGGGACAGGGGGGATAGGGCATACATGAGCGCCTCACTCAAGACGGGTGAGTGGATTAGTTGGAGGAACTTGTAAACACGATATTGTTTGGGGGTGGAACAGTttgaggttgggggggggggggactcaagCTTCCTTGGTGTAGCCAGTAGTTAGCGacgttgtggggggggggggggatagttaCGTTAGTGGCAGCAGCGGAGGTTAGCAGTGGCGCCTCGTCGGGGCCCGTGGTGGACGACATGTGGCTGAGGGTGGGCGAGGGTGAGGGAGACACGCCGGGGGAGTCCAGGCTGCAGATCTGGAGCTCCTCCAGGAGGCCTGCCGTGGAGGACGAATACTGGCTGAGCGCTGACACTGTCACGGGGGAGAGCAAGGGTGACCTGCCCCCCATACCTCCACCAGCACTAACCATGCTAATGCTAACACCGCCGACTACGCCAATTTTGTCCATTCGGTCCCCCCCGCCGCGCTCCAAGGTGGCATATGGGGACGGGACGTACGGAGTGGGCAACAGGGCTTTGAGGCCCGCCAGGTAGTCCAGTGAGTCGGCGCTGTGGCGGTTGTAAGGGGAGCACCGGGCACTGTGGTCGGGGGAGCAGGGGTGAGGAGGCGAGCCCTGGTAGGATGGAAGGGGGTTctGTGTGGGGGACCTCTTGTCTTGCAGGTTGGGCCTGACACTGCGGAAGCCCTTCGCGGCCAAGGAGGAAGTGATGTCGTCGCCGTTCCTTAGGCCATCGGTGCTGCGTGACCTCCAAGcatctggaacacacacacacacaattacaggTCACAGTCACACATCTCATAAAACAATTCTACGTGACAACCCATGATGTATCCC
>TU1829079
AAAAAAAATCAGCCCAGGCTGACACGGTCGGGATCCCCACTCTCACCTGCGTTCCGACTCTGCACGTGAACTCCTCCTGGGCTGAACGAGGCAGGGAGATGGGGGTAGGCCGGGGGTGAGGACGGTCTCTGGGGGTGGGGCGCACCTCCATTCATTGCCACTTGAATAGCTTGgccctggaggggggggggacatcaGAACCAGTAGGGTAAAAACAGTGCACTCCCATTTGCAAGAAACAACGTTTATAGTGGTCAAAACGTGATGGGACAGACACCCACATAATGTTATCAGCTGGTTAAGACTCGAAGACTCTTAGTCTCTTAGTCTGTAATAACAATAGGTTTTACCGGTAAGACTAAAATGGTTATACGAGTAGACTGTGATTGTTATGAGAGGAGTGCAACAGACAGTATTGGAAAAGCGTGCTGCATCAGAGAAAACACAACAGGTTAGTTAAAAAAGAAGTAGTGGAGTAGTCGGACGTCAACAAACAACATGGGCTTACTTCAAAAATCAGGTGTTTCATTATTGGTTAGAAATGACACGTAAAAGCCGGTGTCAAATCCTTGTCACATTTAAAGACCCACAATCAAAAACTCCCACAATGGAAAAAAAAAGAGACTTAACAGGCATAGGAAATAAGTTGTTGTACCTAAAAGTTAATGACAGTTGGACAAATCCTCACATTTGTGGTATGTGAGAAACACAAAAAAGACACGCTAAGGTGGGATAACGATGCATCAAGACGTTGTTAGACTAAACCATCAGAAGAGTGCAAAGGGTGATGTTATGACAGTGGGACAGGGGGGATAGGGCATACATGAGCGCCTCACTCAAGACGGGTGAGTGGATTAGTTGGAGGAACTTGTAAACACGATATTGTTTGGGGGTGGAACAGTttgaggttgggggggggggggactcaagCTTCCTTGGTGTAGCCAGTAGTTAGCGacgttgtggggggggggggggatagttaCGTTAGTGGCAGCAGCGGAGGTTAGCAGTGGCGCCTCGTCGGGGCCCGTGGTGGACGACATGTGGCTGAGGGTGGGCGAGGGTGAGGGAGACACGCCGGGGGAGTCCAGGCTGCAGATCTGGAGCTCCTCCAGGAGGCCTGCCGTGGAGGACGAATACTGGCTGAGCGCTGACACTGTCACGGGGGAGAGCAAGGGTGACCTGCCCCCCATACCTCCACCAGCACTAACCATGCTAATGCTAACACCGCCGACTACGCCAATTTTGTCCATTCGGTCCCCCCCGCCGCGCTCCAAGGTGGCATATGGGGACGGGACGTACGGAGTGGGCAACAGGGCTTTGAGGCCCGCCAGGTAGTCCAGTGAGTCGGCGCTGTGGCGGTTGTAAGGGGAGCACCGGGCACTGTGGTCGGGGGAGCAGGGGTGAGGAGGCGAGCCCTGGTAGGATGGAAGGGGGTTCAGCACATTCGCTTCGGCCGGTCGAGGTGGAACTGGAGGGGGGCCTTTCACCTTCCTGGCCTCCCCAGGGTCAGAAGCTAGGGTGGGGGCCTTGGAGCCCGGGGGTTTGGGGCTCCGCGGGGCCatctggatggagagagaggctgtgtgatGgctttgttactttggtccca

Function

NR:

description
sorbin and SH3 domain-containing protein 2-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1829078 False 1646 TUCP 0.53 2 18043411 18046661
TU1829079 True 1615 TUCP 0.54 3 18043411 18104592
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110498558 LOC106609924 coding upstream 81290 17956507 ~ 17962121 (+)
LOC110497454 LOC106609867 coding upstream 101866 17937002 ~ 17941545 (+)
LOC110497453 lrat coding upstream 107077 17934316 ~ 17936334 (+)
LOC110497449 LOC106609909 coding upstream 199651 17806915 ~ 17843760 (+)
LOC110497448 LOC106609908 coding upstream 293645 17740434 ~ 17749766 (+)
LOC110497458 LOC100135888 coding downstream 56505 18161097 ~ 18218659 (+)
LOC118941462 NA coding downstream 698135 18802727 ~ 18815594 (+)
LOC118941552 NA coding downstream 733960 18838552 ~ 18838607 (+)
LOC110497463 LOC106609940 coding downstream 1019117 19123709 ~ 19141362 (+)
LOC110497461 LOC106609942 coding downstream 1038578 19143170 ~ 19147993 (+)
G1597341 LOC106572245 non-coding upstream 75 18038352 ~ 18043336 (+)
G1597336 NA non-coding upstream 10507 18025530 ~ 18032904 (+)
G1597295 NA non-coding upstream 25161 18007723 ~ 18018250 (+)
G1597334 NA non-coding upstream 36954 18006252 ~ 18006457 (+)
G1597261 LOC106602564 non-coding upstream 50488 17912787 ~ 17992923 (+)
G1597364 NA non-coding downstream 188 18104780 ~ 18105037 (+)
G1597602 NA non-coding downstream 1019 18105611 ~ 18105944 (+)
G1597626 NA non-coding downstream 28802 18133394 ~ 18133718 (+)
G1597628 NA non-coding downstream 30584 18135176 ~ 18135395 (+)
G1597634 NA non-coding downstream 34495 18139087 ~ 18139354 (+)
pold4 pold4 other upstream 419938 17621396 ~ 17623478 (+)
G1594955 NA other upstream 1269702 16765543 ~ 16773709 (+)
G1594895 NA other upstream 1365289 16675609 ~ 16678122 (+)
G1594737 LOC106610136 other upstream 1607044 16434453 ~ 16436367 (+)
G1598786 NA other downstream 928293 19032885 ~ 19033176 (+)
LOC110497472 LOC106609985 other downstream 1221836 19326377 ~ 19328349 (+)
G1598960 NA other downstream 1227149 19331741 ~ 19332220 (+)
G1598961 LOC107681197 other downstream 1228428 19333020 ~ 19333450 (+)
G1599186 NA other downstream 1287699 19392291 ~ 19418517 (+)

Expression

G1597342(LOC106609914) Expression in all Baseline Samples

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G1597342(LOC106609914) Expression in each Bioproject

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G1597342(LOC106609914) Expression in each Sample
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Co-expression Network